Difference between revisions of "Part:BBa K346003"

Revision as of 08:35, 27 October 2010

RBS(B0032)+MBP(mercury metal binding peptide engineered from MerR)

This part is a combination of a rbs, a mbp, the coding sequence of a mercury metal binding peptide egineered from MerR.It was designed to function as mercury(II) binding peptide in our project.It is expressed in the cytosol and when fused with the periplasm protein Dsba or the membrane protein Lpp-OmpA, it will be expressed and translocated to the periplasm and membrane.In short, this part function as the fundamental metal binding peptide of mercury in our project.

Description

MerR, the mercury-responsible transcription factor(figure on the left), acts as an effective mercury accumulator in aquatic environment.However, as a transcription regulator, over-expression of MerR in bacteria may lead to some unpredictable side effect. Earlier work suggested that the constructed peptide only consisting of the metal binding domain can form a stable dimer with its mercury binding affinity remained and DNA binding domain and metal binding domain can function individually.Based on all these above and carefully structure analysis of MerR via 3D structure modeling, we directly tandemed two copies of metal binding domain of MerR together, to implement a mercury metal binding peptide (MBP) as is shown in the figure on the right.

The figure shows the structure of MerR and MBP. The left figure is MerR, the mercury-responsive transcription factor. The right figure shows the predicted structure of resulted metal binding peptide. Mercury ions are indicated as black balls in metal binding pockets.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
INCOMPATIBLE WITH RFC[21]
Illegal BamHI site found at 184
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

@@ Line 19: / Line 19: @@
-== Result==
-----
-We first use SDS-PAGE and Western blotting to analyse the expression of this engineered MBP protein. We can see from the result of them that the MBP is truly expressed in a large quantity. We then analyze the different form of MPB fusion protein, the DsbA-MBP which is expressed in the periplasm, and the lpp-OmpA-MBP on the surface, also using Western blotting and SDS-PAGE. The result indicated that the right fusion protein have been expressed correctly to their location.
-[[Image:expression ahg.jpg]]
-Figure 1: The result of SDS-PAGE and Western blotting, indicating the expression of MBP, DsbA-MBP, lpp-OmpA-MBP in different location.
-We then use IPC-AER to detect the mercury binding capacity of the engineered MBP. From the result we can see that the surface displayed lpp-OmpA-MBP has the highest capacity and efficiency.
-[[Image:dfadsf.jpg]]
-Figure 2: Overnight cultures were diluted 1:100 and grown to final OD600=0.6-1.0. We then resuspend the culture with 1% PBS and make samples for ICP-AES according to the protocol(See more about this, please visit our wiki.)