Difference between revisions of "Part:BBa K404236"

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<partinfo>BBa_K404236 short</partinfo>
 
<partinfo>BBa_K404236 short</partinfo>
<br><b>The RGD integrin binding motif including a knockout of the natural HSPG tropism, inserted into the 453 loop of [[Part:BBa_K404003|[AAV2]-Rep-VP123(ViralBrick-587KO-empty)_p5-TATAless]]</b>
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<br><b>The RGD integrin binding motif, inserted into the 453 loop of [[Part:BBa_K404003|[AAV2]-Rep-VP123(ViralBrick-587KO-empty)_p5-TATAless]]</b>
  
  

Revision as of 22:30, 25 October 2010

[AAV2]Rep-VP123_p5TATAless (ViralBrick 453 RGD-587 HSPG-KO)
The RGD integrin binding motif, inserted into the 453 loop of [AAV2]-Rep-VP123(ViralBrick-587KO-empty)_p5-TATAless



Usage and Biology

Integrins are transmembrane proteins that, among other functions, mediate cell attachment to surrounding tissues. They bind to a motif consisting of the amino acids arginine, glycine and aspartic acid (RGD in one-letter code). Because Integrin is highly expressed in many tumor cell lines (Albelda et al., 1990), (Damjanovich, Albelda, Mette, & Buck, 1992), (Lessey et al., 1995), (Smythe, LeBel, Bavaria, Kaiser, & Albelda, 1995), (Gladson & Cheresh, 1991), AAV particles displaying the RGD motif on various positions in their capsid proteins have been created by (Shi et al., 2003). Particles displaying RGD at amino acid positions 584 & 588 as well as 453 or 587 (Boucas et al., 2009) showed transduction efficiencies similar to wt AAV, even when the cells’ HSPG receptors were blocked by heparin sulfate or when the natural HSPG binding motif on the capsid surface was knocked out. To further broaden the area of therapeutic application, we created a ViralBrick containing the RGD motive to specifically target cells with low HSPG-/high Integrin expression.

Freiburg10_ViralBrick_motif_RGD.png

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 3644
    Illegal XhoI site found at 1913
    Illegal XhoI site found at 2099
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 4170
    Illegal BsaI site found at 4352
    Illegal BsaI site found at 4389
    Illegal SapI site found at 3048