Difference between revisions of "Part:BBa K5246011"
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===Usage and Biology=== | ===Usage and Biology=== | ||
| − | The HfsK gene from Caulobacter crescentus encodes | + | The HfsK gene from Caulobacter crescentus encodes a 359 amino acid acetyltransferase protein. HfsK is a c-di-GMP effector involved in holdfast biogenesis. Cells lacking HfsK form highly malleable holdfast structures with reduced adhesive strength that cannot support surface colonization. HfsK is a soluble protein that associates with the cell membrane during most of the cell cycle but is transferred to the cytosol in the process of holdfast synthesis. HfsK deacetylates N-acetyl-glucosamine from the holdfast, which results in better adhesive properties. |
===Sequence and Features=== | ===Sequence and Features=== | ||
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====Bioinformatic analysis==== | ====Bioinformatic analysis==== | ||
| − | Using CDD analysis, it was identified that HfsK is similar to the GNAT N-acetyltransferase family. | + | Using CDD analysis, it was identified that HfsK is similar to the GNAT N-acetyltransferase family. Its domains suggest HfsK is part of the Bcls superfamily. Acetyltransferases of this superfamily are usually involved in cellulose biosynthesis. Protein BLAST did not give conclusive results, which could result from a unique HfsK protein amino acid sequence and structure. |
| − | + | DeepTMHMM's protein topology predictions showed that HfsK is most likely a globular protein located on the cytoplasmic side of the membrane. | |
| − | High confidence scores of | + | High confidence scores of AlphaFold 3 structures suggest that HfsK is likely a globular protein. A pTM score above 0.5 suggests that the predicted overall structure may closely resemble the true protein fold, while ipTM indicates the accuracy of the subunit positioning within the complex. Values higher than 0.8 represent confident, high-quality predictions (Fig.1). |
To summarise, HfsK is most likely a globular N-acetyltransferase. Earlier evidence, combined with our findings, suggests that it plays a role in the deacetylation of N-acetylglucosamine within the holdfast synthesis pathway. [1][2][3] | To summarise, HfsK is most likely a globular N-acetyltransferase. Earlier evidence, combined with our findings, suggests that it plays a role in the deacetylation of N-acetylglucosamine within the holdfast synthesis pathway. [1][2][3] | ||
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2. Sprecher, K.S. et al. (2017) ‘Cohesive properties of the Caulobacter crescentus holdfast adhesin are regulated by a novel C-di-GMP effector protein’, mBio, 8(2). doi:10.1128/mbio.00294-17. | 2. Sprecher, K.S. et al. (2017) ‘Cohesive properties of the Caulobacter crescentus holdfast adhesin are regulated by a novel C-di-GMP effector protein’, mBio, 8(2). doi:10.1128/mbio.00294-17. | ||
<br> | <br> | ||
| − | 3. Hershey, D.M., Fiebig, A. and Crosson, S. (2019) ‘A genome-wide analysis of adhesion in | + | 3. Hershey, D.M., Fiebig, A. and Crosson, S. (2019) ‘A genome-wide analysis of adhesion in Caulobacter crescentus identifies new regulatory and biosynthetic components for holdfast assembly’, mBio, 10(1). doi:10.1128/mbio.02273-18. |
Revision as of 12:02, 28 September 2024
CB2/CB2A HfsK Acetyltransferase
Introduction
Usage and Biology
The HfsK gene from Caulobacter crescentus encodes a 359 amino acid acetyltransferase protein. HfsK is a c-di-GMP effector involved in holdfast biogenesis. Cells lacking HfsK form highly malleable holdfast structures with reduced adhesive strength that cannot support surface colonization. HfsK is a soluble protein that associates with the cell membrane during most of the cell cycle but is transferred to the cytosol in the process of holdfast synthesis. HfsK deacetylates N-acetyl-glucosamine from the holdfast, which results in better adhesive properties.
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 64
- 12INCOMPATIBLE WITH RFC[12]Illegal PstI site found at 64
- 21INCOMPATIBLE WITH RFC[21]Illegal XhoI site found at 793
- 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 64
- 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 64
- 1000COMPATIBLE WITH RFC[1000]
Experimental characterization
Bioinformatic analysis
Using CDD analysis, it was identified that HfsK is similar to the GNAT N-acetyltransferase family. Its domains suggest HfsK is part of the Bcls superfamily. Acetyltransferases of this superfamily are usually involved in cellulose biosynthesis. Protein BLAST did not give conclusive results, which could result from a unique HfsK protein amino acid sequence and structure.
DeepTMHMM's protein topology predictions showed that HfsK is most likely a globular protein located on the cytoplasmic side of the membrane.
High confidence scores of AlphaFold 3 structures suggest that HfsK is likely a globular protein. A pTM score above 0.5 suggests that the predicted overall structure may closely resemble the true protein fold, while ipTM indicates the accuracy of the subunit positioning within the complex. Values higher than 0.8 represent confident, high-quality predictions (Fig.1).
To summarise, HfsK is most likely a globular N-acetyltransferase. Earlier evidence, combined with our findings, suggests that it plays a role in the deacetylation of N-acetylglucosamine within the holdfast synthesis pathway. [1][2][3]
References
1. Chepkwony, N.K. and Brun, Y.V. (2021) ‘A polysaccharide deacetylase enhances bacterial adhesion in high-ionic-strength environments’, iScience, 24(9), p. 103071. doi:10.1016/j.isci.2021.103071.
2. Sprecher, K.S. et al. (2017) ‘Cohesive properties of the Caulobacter crescentus holdfast adhesin are regulated by a novel C-di-GMP effector protein’, mBio, 8(2). doi:10.1128/mbio.00294-17.
3. Hershey, D.M., Fiebig, A. and Crosson, S. (2019) ‘A genome-wide analysis of adhesion in Caulobacter crescentus identifies new regulatory and biosynthetic components for holdfast assembly’, mBio, 10(1). doi:10.1128/mbio.02273-18.