Difference between revisions of "Part:BBa K5375005"
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<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
<partinfo>BBa_K5375005 SequenceAndFeatures</partinfo> | <partinfo>BBa_K5375005 SequenceAndFeatures</partinfo> | ||
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===Functional Parameters=== | ===Functional Parameters=== | ||
<partinfo>BBa_K5375005 parameters</partinfo> | <partinfo>BBa_K5375005 parameters</partinfo> | ||
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+ | __TOC__ | ||
+ | |||
+ | <span id="origin"></span> | ||
+ | = Origin = | ||
+ | |||
+ | Synthesized by company and constructed by the team. | ||
+ | |||
+ | <span id="properties"></span> | ||
+ | = Properties = | ||
+ | |||
+ | Fusion expression of protein HSP70-GFP. | ||
+ | |||
+ | <span id="usage-and-biology"></span> | ||
+ | = Usage and Biology = | ||
+ | |||
+ | The pA7 plasmid vector serves as a carrier for the expression of fusion proteins, particularly well-suited for the production of GFP fusion proteins in prokaryotic cells such as *E. coli*. This vector features a multi-cloning site (MCS) which enables researchers to insert target genes, thereby facilitating the fusion of the target protein with GFP for subsequent expression. Such design allows for visualization and tracking of the target protein through GFP, aiding in investigations into its localization, expression levels, and dynamic behavior within cellular environments. Typically, the pA7 plasmid incorporates a robust promoter—such as lac or tac—to enhance expression efficiency and may include an antibiotic resistance gene serving as a selection marker to identify transformed bacterial strains. Furthermore, this vector may also possess a cleavable tag sequence that permits removal of GFP by specific proteases (e.g., TEV protease) at later stages, thus yielding purified target proteins. This strategic design streamlines protein purification processes and facilitates functional analysis of proteins. | ||
+ | |||
+ | <span id="cultivation-purification-sds-page"></span> | ||
+ | = Cultivation, Purification and SDS-PAGE = | ||
+ | |||
+ | <html> | ||
+ | <div style="text-align:center;"> | ||
+ | <img src="https://static.igem.wiki/teams/5375/bba-k5375005/1.png" width="50%" style="display:block; margin:auto;" alt="Plasmid map of pA7-GFP-HSP70" > | ||
+ | <div style="text-align:center;"> | ||
+ | <caption>Figure 1. Plasmid map of pA7-GFP-HSP70.</caption> | ||
+ | </div> | ||
+ | </div> | ||
+ | </html> | ||
+ | |||
+ | The vector pA7 originates from a non-respiratory clinical isolate of *Pseudomonas aeruginosa* from Argentina, later linked with GFP. It is used for protein expression in plants. The plant expression vector includes a 35S promoter and ampicillin resistance, and it is usually cultivated in a DH5α *E. coli* strain at 37°C. It was chosen to measure the protein expression of HSP70. | ||
+ | |||
+ | <html> | ||
+ | <div style="text-align:center;"> | ||
+ | <img src="https://static.igem.wiki/teams/5375/bba-k5375005/2.png" width="50%" style="display:block; margin:auto;" alt="PCR amplification of the fragment used for plasmid construction" > | ||
+ | <div style="text-align:center;"> | ||
+ | <caption>Figure 2. PCR amplification of the fragment used for plasmid construction.</caption> | ||
+ | </div> | ||
+ | </div> | ||
+ | </html> | ||
+ | |||
+ | We constructed pA7-GFP-HSP70 using homologous recombination. The pA7-GFP-HSP70 sequence was amplified by PCR with a length of 2123 bp. | ||
+ | |||
+ | <html> | ||
+ | <div style="text-align:center;"> | ||
+ | <img src="https://static.igem.wiki/teams/5375/bba-k5375005/3.png" width="50%" style="display:block; margin:auto;" alt="Growth of plasmid pA7-GFP-HSP70 transformed bacteria on LB agar plates" > | ||
+ | <div style="text-align:center;"> | ||
+ | <caption>Figure 3. Growth of plasmid pA7-GFP-HSP70 transformed bacteria on LB agar plates.</caption> | ||
+ | </div> | ||
+ | </div> | ||
+ | </html> | ||
+ | |||
+ | Then, the target gene sequence including HSP70 was inserted. It was reconstructed through homologous recombination. To incubate and culture the reassembled plasmid overnight, it was diluted and spread out onto an LB agar plate. The growth of pA7-GFP-HSP70 was significant. | ||
+ | |||
+ | <span id="measurement-characterization"></span> | ||
+ | = Measurement and Characterization = | ||
+ | |||
+ | <html> | ||
+ | <div style="text-align:center;"> | ||
+ | <img src="https://static.igem.wiki/teams/5375/bba-k5375005/4.png" width="50%" style="display:block; margin:auto;" alt="Colony PCR verification of PA7-HSP70" > | ||
+ | <div style="text-align:center;"> | ||
+ | <caption>Figure 4. Colony PCR verification of PA7-HSP70.</caption> | ||
+ | </div> | ||
+ | </div> | ||
+ | </html> | ||
+ | |||
+ | Single colonies from each of the LB agar plates were taken and amplified through PCR. Multiple samples were taken from each of the plates to ensure that even if an error occurs, other samples could cover it. | ||
+ | |||
+ | <span id="reference"></span> | ||
+ | = Reference = | ||
+ | |||
+ | Kwon Y. J., Kim S. H., Lee S. G., Lee S. Y., & Kim T. H. (2001). Construction of a novel expression vector system for enhanced production of recombinant proteins in *Escherichia coli*. *Journal of Industrial Microbiology & Biotechnology*, 27(5), 291-296. [https://doi.org/10.1038/sj.jimb.7000919](https://doi.org/10.1038/sj.jimb.7000919) | ||
+ | |||
+ | Buchholz F., & Prehn S. (2002). The Gateway System: Applications for protein expression and tagging. *Current Opinion in Biotechnology*, 13(6), 553-558. [https://doi.org/10.1016/S0958-1669(02)00362-9](https://doi.org/10.1016/S0958-1669(02)00362-9) | ||
+ | |||
+ | He X., & Wang X. (2005). Expression vectors and systems for recombinant protein expression. In Methods in Molecular Biology Vol. 297 Protein Expression Systems. Humana Press. |
Revision as of 10:44, 25 September 2024
pA7-GFP-HSP70
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 5012
Illegal BglII site found at 5936
Illegal BamHI site found at 4127
Illegal XhoI site found at 3302 - 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 5097
- 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI site found at 4091
Illegal BsaI.rc site found at 4987
Illegal SapI.rc site found at 6306
Contents
Origin
Synthesized by company and constructed by the team.
Properties
Fusion expression of protein HSP70-GFP.
Usage and Biology
The pA7 plasmid vector serves as a carrier for the expression of fusion proteins, particularly well-suited for the production of GFP fusion proteins in prokaryotic cells such as *E. coli*. This vector features a multi-cloning site (MCS) which enables researchers to insert target genes, thereby facilitating the fusion of the target protein with GFP for subsequent expression. Such design allows for visualization and tracking of the target protein through GFP, aiding in investigations into its localization, expression levels, and dynamic behavior within cellular environments. Typically, the pA7 plasmid incorporates a robust promoter—such as lac or tac—to enhance expression efficiency and may include an antibiotic resistance gene serving as a selection marker to identify transformed bacterial strains. Furthermore, this vector may also possess a cleavable tag sequence that permits removal of GFP by specific proteases (e.g., TEV protease) at later stages, thus yielding purified target proteins. This strategic design streamlines protein purification processes and facilitates functional analysis of proteins.
Cultivation, Purification and SDS-PAGE
The vector pA7 originates from a non-respiratory clinical isolate of *Pseudomonas aeruginosa* from Argentina, later linked with GFP. It is used for protein expression in plants. The plant expression vector includes a 35S promoter and ampicillin resistance, and it is usually cultivated in a DH5α *E. coli* strain at 37°C. It was chosen to measure the protein expression of HSP70.
We constructed pA7-GFP-HSP70 using homologous recombination. The pA7-GFP-HSP70 sequence was amplified by PCR with a length of 2123 bp.
Then, the target gene sequence including HSP70 was inserted. It was reconstructed through homologous recombination. To incubate and culture the reassembled plasmid overnight, it was diluted and spread out onto an LB agar plate. The growth of pA7-GFP-HSP70 was significant.
Measurement and Characterization
Single colonies from each of the LB agar plates were taken and amplified through PCR. Multiple samples were taken from each of the plates to ensure that even if an error occurs, other samples could cover it.
Reference
Kwon Y. J., Kim S. H., Lee S. G., Lee S. Y., & Kim T. H. (2001). Construction of a novel expression vector system for enhanced production of recombinant proteins in *Escherichia coli*. *Journal of Industrial Microbiology & Biotechnology*, 27(5), 291-296. [1](https://doi.org/10.1038/sj.jimb.7000919)
Buchholz F., & Prehn S. (2002). The Gateway System: Applications for protein expression and tagging. *Current Opinion in Biotechnology*, 13(6), 553-558. [2](https://doi.org/10.1016/S0958-1669(02)00362-9)
He X., & Wang X. (2005). Expression vectors and systems for recombinant protein expression. In Methods in Molecular Biology Vol. 297 Protein Expression Systems. Humana Press.