Difference between revisions of "Part:BBa K5043004"

Latest revision as of 09:38, 30 September 2024

phdF from M. vanbaalenii PYR-1

Encodes ring cleavage dioxygenase presumably catalysing reaction of 4,5-dihydroxypyrene to Phenanthrene-4,5-Dicarboxylate. This is the third step in pyrene biodegradation. This part was derived from Mycobacterium vanbaalenii Pyr-1 which is a known pyrene degrader. [1]

[1] S.-J. Kim, O. Kweon, R. C. Jones, J. P. Freeman, R. D. Edmondson, and C. E. Cerniglia, "Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology," Journal of bacteriology, vol. 189, no. 2, pp. 464–472, 2007, doi: 10.1128/jb.01310-06.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
INCOMPATIBLE WITH RFC[21]
Illegal BamHI site found at 321
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal AgeI site found at 412
Illegal AgeI site found at 470
1000
COMPATIBLE WITH RFC[1000]

@@ Line 4: / Line 4: @@
 Encodes ring cleavage dioxygenase presumably catalysing reaction of  4,5-dihydroxypyrene to Phenanthrene-4,5-Dicarboxylate. This is the third step in pyrene biodegradation.
-This part was derived from Mycobacterium vanbaalenii Pyr-1 which is a known pyrene degrader. [1]
+This part was derived from <i> Mycobacterium vanbaalenii </i> Pyr-1 which is a known pyrene degrader. [1]
 [1] S.-J. Kim, O. Kweon, R. C. Jones, J. P. Freeman, R. D. Edmondson, and C. E. Cerniglia, "Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology," Journal of bacteriology, vol. 189, no. 2, pp. 464–472, 2007, doi: 10.1128/jb.01310-06.