Difference between revisions of "Part:BBa K5043003"

Revision as of 17:51, 17 August 2024

phdE from Nocardioides sp. strain KP7

Encodes dihydrodiol dehydrogenase presumably catalysing reaction from Cis-4,5-Dihydro-4,5-dihydroxypyrene to 4,5-dihydroxypyrene. This is the second step in pyrene biodegradation. [1]

[1] S.-J. Kim, O. Kweon, R. C. Jones, J. P. Freeman, R. D. Edmondson, and C. E. Cerniglia, "Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology," Journal of bacteriology, vol. 189, no. 2, pp. 464–472, 2007, doi: 10.1128/jb.01310-06

Sequence and Features

Assembly Compatibility:

10
INCOMPATIBLE WITH RFC[10]
Illegal PstI site found at 658
12
INCOMPATIBLE WITH RFC[12]
Illegal PstI site found at 658
21
INCOMPATIBLE WITH RFC[21]
Illegal BglII site found at 329
23
INCOMPATIBLE WITH RFC[23]
Illegal PstI site found at 658
25
INCOMPATIBLE WITH RFC[25]
Illegal PstI site found at 658
Illegal NgoMIV site found at 688
Illegal NgoMIV site found at 793
1000
COMPATIBLE WITH RFC[1000]

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K5043003 short</partinfo>
-Encodes dihydrodiol dehydrogenase catalyzing reaction from Cis-4,5-Dihydro-4,5-dihydroxypyrene to 4,5-dihydroxypyrene. This is the second step in pyrene biodegradation. [1]
+Encodes dihydrodiol dehydrogenase presumably catalysing reaction from Cis-4,5-Dihydro-4,5-dihydroxypyrene to 4,5-dihydroxypyrene. This is the second step in pyrene biodegradation. [1]
 [1] S.-J. Kim, O. Kweon, R. C. Jones, J. P. Freeman, R. D. Edmondson, and C. E. Cerniglia, "Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology," Journal of bacteriology, vol. 189, no. 2, pp. 464–472, 2007, doi: 10.1128/jb.01310-06