Difference between revisions of "Part:BBa K4694006"
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===Usage and Biology=== | ===Usage and Biology=== | ||
| − | Quorum sensing (QS) is a form of bacterial communication allowing bacteria to detect and respond to different kinds of stimuli. QS ensures bacteria can develop into a high cell density from a low cell density [1]. Acyl homoserine lactone (AHL) are a class of quorum sensing signalling molecules. AHLs are synthesised by the Luxl enzyme and are then able to passively diffuse across the bacterial membrane in both directions. While AHLs diffuse into the cell they are recognised by the LuxR receptor. Following binding to the receptor, this dimerised complex acts as a transcription factor on the Lux box. This activates expression of virulence-associated genes downstream, as well as the Luxl/LuxR AHL system. These virulence genes have a wide variety of functions in the cell, including regulation of biofilm formation [2, 3]. By degrading AHLs we could prevent biofilm formation by pathogenic Gram-negative bacteria. AHL-lactonase works outside the cell by degrading N-acyl homoserine lactones (AHLs) into N-acyl-homoserine. | + | Quorum sensing (QS) is a form of bacterial communication allowing bacteria to detect and respond to different kinds of stimuli. QS ensures bacteria can develop into a high cell density from a low cell density [1]. Acyl homoserine lactone (AHL) are a class of quorum sensing signalling molecules. AHLs are synthesised by the Luxl enzyme and are then able to passively diffuse across the bacterial membrane in both directions. While AHLs diffuse into the cell they are recognised by the LuxR receptor, see figure below. Following binding to the receptor, this dimerised complex acts as a transcription factor on the Lux box. This activates expression of virulence-associated genes downstream, as well as the Luxl/LuxR AHL system. These virulence genes have a wide variety of functions in the cell, including regulation of biofilm formation [2, 3]. By degrading AHLs we could prevent biofilm formation by pathogenic Gram-negative bacteria. AHL-lactonase works outside the cell by degrading N-acyl homoserine lactones (AHLs) into N-acyl-homoserine. |
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| + | <img style="width:60%; margin-left:auto; margin-right:auto; display:block; margin-top: 10px;" src="https://static.igem.wiki/teams/4694/wiki/wiki-images/ahl-diagram-new.png"> | ||
The amino acid sequence was taken <i>Bacillus thuringiensis serovar kurstaki</i> (29339) [4]. The DNA sequence was codon optimised using the IDT software for <i>L. lactis</i>, forbidden restriction sites removed, a 6xHis_tag flanked by GS linkers was added to the N-terminal, prefix and suffix sequences compatible with Type IIS cloning were added, and the sequence was synthesised by IDT. | The amino acid sequence was taken <i>Bacillus thuringiensis serovar kurstaki</i> (29339) [4]. The DNA sequence was codon optimised using the IDT software for <i>L. lactis</i>, forbidden restriction sites removed, a 6xHis_tag flanked by GS linkers was added to the N-terminal, prefix and suffix sequences compatible with Type IIS cloning were added, and the sequence was synthesised by IDT. | ||
Revision as of 12:41, 12 October 2023
His-AHL-Lactonase
Usage and Biology
Quorum sensing (QS) is a form of bacterial communication allowing bacteria to detect and respond to different kinds of stimuli. QS ensures bacteria can develop into a high cell density from a low cell density [1]. Acyl homoserine lactone (AHL) are a class of quorum sensing signalling molecules. AHLs are synthesised by the Luxl enzyme and are then able to passively diffuse across the bacterial membrane in both directions. While AHLs diffuse into the cell they are recognised by the LuxR receptor, see figure below. Following binding to the receptor, this dimerised complex acts as a transcription factor on the Lux box. This activates expression of virulence-associated genes downstream, as well as the Luxl/LuxR AHL system. These virulence genes have a wide variety of functions in the cell, including regulation of biofilm formation [2, 3]. By degrading AHLs we could prevent biofilm formation by pathogenic Gram-negative bacteria. AHL-lactonase works outside the cell by degrading N-acyl homoserine lactones (AHLs) into N-acyl-homoserine.
The amino acid sequence was taken Bacillus thuringiensis serovar kurstaki (29339) [4]. The DNA sequence was codon optimised using the IDT software for L. lactis, forbidden restriction sites removed, a 6xHis_tag flanked by GS linkers was added to the N-terminal, prefix and suffix sequences compatible with Type IIS cloning were added, and the sequence was synthesised by IDT.
For expression in L. plantarum, this CDS was inserted into plasmid pX1845 via Type IIS cloning. The plasmid has an E. coli origin of replication (pUC18) and antibiotic resistance gene (𝛽-lactamase) to allow for cloning in E. coli DH5𝛼, and an origin of replication and antibiotic resistance gene to allow for propagation in L. plantarum. Three constitutive promoters were tested: synthetic promoter P_48 [5], natural promoter from L. plantarum WCFS1 P_ldhL1 (GenBank NC_004567) and natural promoter from L. lactis P_32 [6]. The latter two promoters had integrated RBS sequences but P_48 was combined with the synthetic RBS SDOPT8 [7]. All constructs contained a terminator from L. lactis MG1363 pepN, called Lacto_term (GenBank AM406671).
For expression in E. coli, this CDS was inserted into plasmid pX1900 via Type IIS cloning. The plasmid has an E. coli origin of replication (pBR322) and antibiotic resistance gene (𝛽-lactamase) to allow for cloning and propagation within E. coli. The strong constitutive promoter [https://parts.igem.org/Part:BBa_J23100 BBa_J23100] combined with the strong RBS [https://parts.igem.org/Part:BBa_B0034 BBa_B0034] were tested as well as the IPTG inducible T7 promoter (original sequence from pET21a) were tested. All constructs contained the double terminator [https://parts.igem.org/Part:BBa_B0015 BBa_B0015].
===Characterisation===
In order to characterise this part and determine whether the enzyme would be able to inhibit biofilm formation in our modified L. plantarum we performed a series of experiments. Please refer to the [https://2023.igem.wiki/exeter/experiments Experiments page] on our Wiki for the protocols.