Difference between revisions of "Part:BBa K4808004"
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colony PCR and gene sequencing, we confirmed the successful knockout of rhtA. </p> | colony PCR and gene sequencing, we confirmed the successful knockout of rhtA. </p> | ||
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| + | <p>Figure 1: （A）the design of pEcCas、pTarget plasmid and donorDNA for gene knockout (B) verified the construction of | ||
| + | pTarget-g-rhtA result through the sequencing testing. (C) colony PCR to respectively determine the knock-out of | ||
| + | rhtA (D) verified the knock-out result through the sequencing testing </p> | ||
| + | <h1><b>g-ilvI</b></h1> | ||
| + | <h2><b>Nature function description【Usage and Biology】</b></h2> | ||
| + | <p>The g-ilvI is a guide RNA that can form a complex with Cas 9 in E.coli cicc 20905. It is a specific RNA sequence | ||
| + | (around 20 bp) that recognizes the ilvI gene and directs the Cas 9 protein there for gene knocking out.</p> | ||
| + | <h2><b>long description【Characterization】</b></h2> | ||
| + | <p>ilvIH gene encodes the acetolactate synthase that can turn a-KB into 2-acetyl-2- Hydroxybutyrate. After knocking | ||
| + | out the ilvI gene, the catabolism of a-KB can be reduced so we can accumulate more a-KB inside the cell. We | ||
| + | design the pTarget plasmid that carrying specific gRNA sequence which can identity the ilvI gene, then we | ||
| + | obtained donorDNA through two rounds of PCR. The donorDNA was used for homologous recombination with genomic | ||
| + | DNA. We then put this pTarget plasmid and donor DNA into AIS-1 strains that has already carried pEcCas plasmid | ||
| + | for the CRISPR-CAS 9 knockout experiment. (We referred to the experimental procedures published by Qi Li, | ||
| + | Bingbing Sun, et al. in 2020) Through the results of colony PCR and gene sequencing, we confirmed the successful | ||
| + | knockout of ilvI.</p> | ||
| + | https://static.igem.wiki/teams/4808/wiki/parts2.png | ||
| + | <p>Figure 2 : （A）the design of pEcCas、pTarget plasmid and donorDNA for gene knockout (B) verified the construction | ||
| + | of pTarget-g-ilvI result through the sequencing testing. (C) colony PCR to respectively determine the knock-out | ||
| + | of ilvI (D) verified the knock-out result through the sequencing testing </p> | ||
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Revision as of 10:09, 10 October 2023
g-ilvI
The g-ilvI is a guide RNA that can form a complex with Cas 9 in E.coli cicc 20905. It is a specific RNA sequence (around 20 bp) that recognizes the ilvI gene and directs the Cas 9 protein there for gene knocking out.
Nature function description【Usage and Biology】
The g-rhtA is a guide RNA that can form a complex with Cas 9 in E.coli cicc 20905. It is a specific RNA sequence (around 20 bp) that recognizes the rhtA gene and directs the Cas 9 protein there for gene knocking out.
long description【Characterization】
rhtA gene encodes a strong threonine exporter and transfers threonine out of the cell. The gene rhtA knockout resulted in the reduction of extracellular secretion of threonine so there are more amount of threonine can be kept inside the cell for the further production of a-KB. We design the pTarget plasmid that carrying specific gRNA sequence which can identity the rhtA gene, then we obtained donorDNA through two rounds of PCR. The donorDNA was used for homologous recombination with genomic DNA. We then put this pTarget plasmid and donor DNA into AIS-0 strains that has already carried pEcCas plasmid for the CRISPR-CAS 9 knockout experiment. (We referred to the experimental procedures published by Qi Li, Bingbing Sun, et al. in 2020) Through the results of colony PCR and gene sequencing, we confirmed the successful knockout of rhtA.
Figure 1: （A）the design of pEcCas、pTarget plasmid and donorDNA for gene knockout (B) verified the construction of pTarget-g-rhtA result through the sequencing testing. (C) colony PCR to respectively determine the knock-out of rhtA (D) verified the knock-out result through the sequencing testing
g-ilvI
Nature function description【Usage and Biology】
The g-ilvI is a guide RNA that can form a complex with Cas 9 in E.coli cicc 20905. It is a specific RNA sequence (around 20 bp) that recognizes the ilvI gene and directs the Cas 9 protein there for gene knocking out.
long description【Characterization】
ilvIH gene encodes the acetolactate synthase that can turn a-KB into 2-acetyl-2- Hydroxybutyrate. After knocking out the ilvI gene, the catabolism of a-KB can be reduced so we can accumulate more a-KB inside the cell. We design the pTarget plasmid that carrying specific gRNA sequence which can identity the ilvI gene, then we obtained donorDNA through two rounds of PCR. The donorDNA was used for homologous recombination with genomic DNA. We then put this pTarget plasmid and donor DNA into AIS-1 strains that has already carried pEcCas plasmid for the CRISPR-CAS 9 knockout experiment. (We referred to the experimental procedures published by Qi Li, Bingbing Sun, et al. in 2020) Through the results of colony PCR and gene sequencing, we confirmed the successful knockout of ilvI.
Figure 2 : （A）the design of pEcCas、pTarget plasmid and donorDNA for gene knockout (B) verified the construction of pTarget-g-ilvI result through the sequencing testing. (C) colony PCR to respectively determine the knock-out of ilvI (D) verified the knock-out result through the sequencing testing