Difference between revisions of "Part:BBa K4808004"
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The g-ilvI is a guide RNA that can form a complex with Cas 9 in E.coli cicc 20905. It is a specific RNA sequence (around 20 bp) that recognizes the ilvI gene and directs the Cas 9 protein there for gene knocking out. | The g-ilvI is a guide RNA that can form a complex with Cas 9 in E.coli cicc 20905. It is a specific RNA sequence (around 20 bp) that recognizes the ilvI gene and directs the Cas 9 protein there for gene knocking out. | ||
| − | <h2><b>Nature function description【Usage and Biology】</b | + | <h2><b>Nature function description【Usage and Biology】</b></h2> |
<p>The g-rhtA is a guide RNA that can form a complex with Cas 9 in E.coli cicc 20905. It is a specific RNA sequence | <p>The g-rhtA is a guide RNA that can form a complex with Cas 9 in E.coli cicc 20905. It is a specific RNA sequence | ||
(around 20 bp) that recognizes the rhtA gene and directs the Cas 9 protein there for gene knocking out.</p> | (around 20 bp) that recognizes the rhtA gene and directs the Cas 9 protein there for gene knocking out.</p> | ||
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referred to the experimental procedures published by Qi Li, Bingbing Sun, et al. in 2020) Through the results of | referred to the experimental procedures published by Qi Li, Bingbing Sun, et al. in 2020) Through the results of | ||
colony PCR and gene sequencing, we confirmed the successful knockout of rhtA. </p> | colony PCR and gene sequencing, we confirmed the successful knockout of rhtA. </p> | ||
| − | + | https://static.igem.wiki/teams/4808/wiki/parts1.png | |
<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
<partinfo>BBa_K4808004 SequenceAndFeatures</partinfo> | <partinfo>BBa_K4808004 SequenceAndFeatures</partinfo> | ||
Revision as of 10:04, 10 October 2023
g-ilvI
The g-ilvI is a guide RNA that can form a complex with Cas 9 in E.coli cicc 20905. It is a specific RNA sequence (around 20 bp) that recognizes the ilvI gene and directs the Cas 9 protein there for gene knocking out.
Nature function description【Usage and Biology】
The g-rhtA is a guide RNA that can form a complex with Cas 9 in E.coli cicc 20905. It is a specific RNA sequence (around 20 bp) that recognizes the rhtA gene and directs the Cas 9 protein there for gene knocking out.
long description【Characterization】
rhtA gene encodes a strong threonine exporter and transfers threonine out of the cell. The gene rhtA knockout resulted in the reduction of extracellular secretion of threonine so there are more amount of threonine can be kept inside the cell for the further production of a-KB. We design the pTarget plasmid that carrying specific gRNA sequence which can identity the rhtA gene, then we obtained donorDNA through two rounds of PCR. The donorDNA was used for homologous recombination with genomic DNA. We then put this pTarget plasmid and donor DNA into AIS-0 strains that has already carried pEcCas plasmid for the CRISPR-CAS 9 knockout experiment. (We referred to the experimental procedures published by Qi Li, Bingbing Sun, et al. in 2020) Through the results of colony PCR and gene sequencing, we confirmed the successful knockout of rhtA.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]