Difference between revisions of "Part:BBa K4365033"
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__NOTOC__ | __NOTOC__ | ||
<partinfo>BBa_K4365033 short</partinfo> | <partinfo>BBa_K4365033 short</partinfo> | ||
− | Hyd-Pt1 is a | + | Hyd-Pt1 is a protein found in <i>Pisolithus tinctorius</i> and belongs to a family of highly secreted proteins called hydrophobins. |
+ | |||
+ | {| class="wikitable" style="margin-left: auto; margin-right: auto; border: none; width:600px;" | ||
+ | |+ Collection of fungal signal peptides | ||
+ | |- | ||
+ | ! | ||
+ | ! ID | ||
+ | ! Source | ||
+ | ! Species | ||
+ | ! Prediction coefficient <ref name="signalp">José Juan Almagro Armenteros et al. (2019) SignalP 5.0 improves signal peptide predictions using deep neural networks Nature Biotechnology, 37, 420-423, doi: 10.1038/s41587-019-0036-z </ref> | ||
+ | ! turboRFP secretion | ||
+ | |- style="text-align:center;" | ||
+ | |sp1 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365006 BBa_K4365006] || MPGI || <i>Magnaporthe grisea</i> || 0.9562 || '''Yes''' | ||
+ | |- style="text-align:center;" | ||
+ | |sp2 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365007 BBa_K4365007] || RodA || <i>Aspergillus nidulans</i> || 0.9553 || '''Yes''' | ||
+ | |- style="text-align:center;" | ||
+ | |sp3 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365008 BBa_K4365008] || HYPI || <i>Aspergillus fumigatus</i> || 0.9703 || No | ||
+ | |- style="text-align:center;" | ||
+ | |sp4 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365009 BBa_K4365009] || SsgA || <i>Metarhizium anisopliae</i> || 0.9126 || No | ||
+ | |- style="text-align:center;" | ||
+ | |sp5 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365010 BBa_K4365010] || HCF-4 || <i>Cladosporium fulvum</i> || 0.9126 || '''Yes''' | ||
+ | |- style="text-align:center;" | ||
+ | |sp6 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365025 BBa_K4365025] || HCF-5 || <i>Cladosporium fulvum</i> || 0.9234 || NA | ||
+ | |- style="text-align:center;" | ||
+ | |sp7 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365026 BBa_K4365026] || CCG-2 || <i>Neurospora crassa</i> || 0.9566 || NA | ||
+ | |- style="text-align:center;" | ||
+ | |sp8 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365011 BBa_K4365011] || HCF-1 || <i>Cladosporium fulvum</i> || 0.6850 || '''Yes''' | ||
+ | |- style="text-align:center;" | ||
+ | |sp9 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365027 BBa_K4365027] || HCF-2 || <i>Cladosporium fulvum</i> || 0.8144 || NA | ||
+ | |- style="text-align:center;" | ||
+ | |sp10 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365012 BBa_K4365012] || HCF-3 || <i>Cladosporium fulvum</i> || 0.7934 || No | ||
+ | |- style="text-align:center;" | ||
+ | |sp11 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365013 BBa_K4365013] || SC3 || <i>Schizophyllum commune</i> || 0.6327 || No | ||
+ | |- style="text-align:center;" | ||
+ | |sp12 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365014 BBa_K4365014] || ABH3 || <i>Agaricus bisporus</i> || 0.9458 || '''Yes''' | ||
+ | |- style="text-align:center;" | ||
+ | |sp13 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365028 BBa_K4365028] || COH1 || <i>Coprinus cinereus</i> || 0.8545 || NA | ||
+ | |- style="text-align:center;" | ||
+ | |sp14 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365015 BBa_K4365015] || FBH1 || <i>Pleurotus ostreatus</i> || 0.3367 || '''Yes''' | ||
+ | |- style="text-align:center;" | ||
+ | |sp15 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365016 BBa_K4365016] || Aa-PRI2 || <i>Agrocybe aegerita</i> || 0.6356 || '''Yes''' | ||
+ | |- style="text-align:center;" | ||
+ | |sp16 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365033 BBa_K4365033] || Hyd-Pt1 || <i>Pisolithus tinctorius</i> || 0.8352 || NA | ||
+ | |- style="text-align:center;" | ||
+ | |sp17 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365017 BBa_K4365017] || HFBI || <i>Trichoderma reesei</i> || 0.9851 || '''Yes''' | ||
+ | |- style="text-align:center;" | ||
+ | |sp18 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365018 BBa_K4365018] || HFBII || <i>Trichoderma reesei</i> || 0.6862 || '''Yes''' | ||
+ | |- style="text-align:center;" | ||
+ | |sp19 || [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365019 BBa_K4365019] || α-mating factor || <i>Saccharomyces cerevisiae</i> || 0.9988 || '''Yes''' | ||
+ | |} | ||
+ | |||
+ | <references /> | ||
+ | |||
+ | <br> | ||
+ | <span class='h3bb'>Sequence and Features</span> | ||
+ | <partinfo>BBa_K4365033 SequenceAndFeatures</partinfo> | ||
+ | |||
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Revision as of 16:03, 11 October 2022
Signal peptide of Hyd-Pt1 from Pisolithus tinctorius
Hyd-Pt1 is a protein found in Pisolithus tinctorius and belongs to a family of highly secreted proteins called hydrophobins.
ID | Source | Species | Prediction coefficient [1] | turboRFP secretion | |
---|---|---|---|---|---|
sp1 | BBa_K4365006 | MPGI | Magnaporthe grisea | 0.9562 | Yes |
sp2 | BBa_K4365007 | RodA | Aspergillus nidulans | 0.9553 | Yes |
sp3 | BBa_K4365008 | HYPI | Aspergillus fumigatus | 0.9703 | No |
sp4 | BBa_K4365009 | SsgA | Metarhizium anisopliae | 0.9126 | No |
sp5 | BBa_K4365010 | HCF-4 | Cladosporium fulvum | 0.9126 | Yes |
sp6 | BBa_K4365025 | HCF-5 | Cladosporium fulvum | 0.9234 | NA |
sp7 | BBa_K4365026 | CCG-2 | Neurospora crassa | 0.9566 | NA |
sp8 | BBa_K4365011 | HCF-1 | Cladosporium fulvum | 0.6850 | Yes |
sp9 | BBa_K4365027 | HCF-2 | Cladosporium fulvum | 0.8144 | NA |
sp10 | BBa_K4365012 | HCF-3 | Cladosporium fulvum | 0.7934 | No |
sp11 | BBa_K4365013 | SC3 | Schizophyllum commune | 0.6327 | No |
sp12 | BBa_K4365014 | ABH3 | Agaricus bisporus | 0.9458 | Yes |
sp13 | BBa_K4365028 | COH1 | Coprinus cinereus | 0.8545 | NA |
sp14 | BBa_K4365015 | FBH1 | Pleurotus ostreatus | 0.3367 | Yes |
sp15 | BBa_K4365016 | Aa-PRI2 | Agrocybe aegerita | 0.6356 | Yes |
sp16 | BBa_K4365033 | Hyd-Pt1 | Pisolithus tinctorius | 0.8352 | NA |
sp17 | BBa_K4365017 | HFBI | Trichoderma reesei | 0.9851 | Yes |
sp18 | BBa_K4365018 | HFBII | Trichoderma reesei | 0.6862 | Yes |
sp19 | BBa_K4365019 | α-mating factor | Saccharomyces cerevisiae | 0.9988 | Yes |
- ↑ José Juan Almagro Armenteros et al. (2019) SignalP 5.0 improves signal peptide predictions using deep neural networks Nature Biotechnology, 37, 420-423, doi: 10.1038/s41587-019-0036-z
Sequence and Features
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]