Difference between revisions of "Part:BBa K4165108"
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Got score of 5 out of 6 in our Quality assessment code after modeling by AlphaFold2.0
 
Got score of 5 out of 6 in our Quality assessment code after modeling by AlphaFold2.0
  
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cbeta_deviations = 0, clashscore = 0, molprobity = 1.62, ramachandran_favored = 100, ramachandran_outliers = 0, Qmean_4 = -5.843485, Qmean6 = -4.746417
 
  
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===Modeling===
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    <th>cbeta_deviations</th>
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    <th>clashscore</th>
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    <th>molprobity</th>
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    <th>ramachandran_favored</th>
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    <th>ramachandran_outliers</th>
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    <th>Qmean_4</th>
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    <th>Qmean_6</th>
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    <td>0</td>
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    <td>0</td>
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    <td>1.62</td>
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    <td>100</td>
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    <td>0</td>
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    <td>-5.843485/td>
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    <td>-4.746417</td>
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===Dry Lab===
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<p style=" font-weight: bold; font-size:14px;"> Modeling </p>
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<p><img src="https://static.igem.wiki/teams/4165/wiki/parts-registry/htra1-bp/h1n.jpg" style="margin-left:200px;" alt="" width="500" /></p>
 
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                   Figure 1.: 3D Model of H1C peptide Modelled by AlphaFold2.0 displayed in Pyomol
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                   Figure 1.: 3D Model of H1C peptide Modelled by AlphaFold2.0 displayed in Pymol.
  
  

Revision as of 15:21, 11 October 2022


HTRA Binding Peptide 14

part encodes for a synthetic peptide that binds to the PDZ domain of HTRA1 protein

Usage and Biology

decameric peptide, Binds specifically to PDZ domain of HTRA1 Protein with ΔG of 3.8 ± 0.2 kcal/mol.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Functional Parameters

Got score of 5 out of 6 in our Quality assessment code after modeling by AlphaFold2.0


cbeta_deviations clashscore molprobity ramachandran_favored ramachandran_outliers Qmean_4 Qmean_6
0 0 1.62 100 0 -5.843485/td> -4.746417

Dry Lab

Modeling 


                 Figure 1.: 3D Model of H1C peptide Modelled by AlphaFold2.0 displayed in Pymol.


References

Rey, J., Breiden, M., Lux, V., Bluemke, A., Steindel, M., Ripkens, K., ... & Ehrmann, M. (2022). An allosteric HTRA1-calpain 2 complex with restricted activation profile. Proceedings of the National Academy of Sciences, 119(14), e2113520119.