Difference between revisions of "Part:BBa K4165239"
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Clamp [18] composed of Tau Binding Peptide TD28rev (BBa_K4165006) , linker length of GGSGGGGSGG ( BBa_K4165236 ),Tau Binding Peptide WWW ( BBa_K4165007) . Our Clamp design was based on our project aim for binding with Tau and amyloid beta for further degradation. | Clamp [18] composed of Tau Binding Peptide TD28rev (BBa_K4165006) , linker length of GGSGGGGSGG ( BBa_K4165236 ),Tau Binding Peptide WWW ( BBa_K4165007) . Our Clamp design was based on our project aim for binding with Tau and amyloid beta for further degradation. | ||
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===Usage and Biology=== | ===Usage and Biology=== | ||
| + | According to Previous Research results, Our binding peptides proved to have dual effect of binding to both Tau and amyloid beta . According to this , we designed our clamps consists of with various linker lengths and peptides parts for further validation of this theory and analysis by wet-lab and dry lab results. According to our project Criteria , our clamps supposed to have binding affinity for tau and amyloid beta higher enough to make the inhibitor (BBa_K4165008) , (BBa_K4165010) unbind from catalytic domain of HTRA1 protease system (BBa_K4165004). | ||
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| + | ===3D Modeling and Ranking=== | ||
| + | TRRosetta models this composite part with a score of 4 out of 6 according to our quality assessment code (you can find the python script file on the programming club page with further explanation of how you can optimize it to your needs). | ||
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| + | <html> | ||
| + | <p><img src="https://static.igem.wiki/teams/4165/wiki/parts-registry/18.png" style="margin-left:200px;" alt="" width="500" /></p> | ||
| + | </html> | ||
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| + | Figure 1. The 3D structure of Clamp 18 modeled by TRrosetta | ||
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Revision as of 09:58, 8 October 2022
Clamp [18]
Clamp [18] composed of Tau Binding Peptide TD28rev (BBa_K4165006) , linker length of GGSGGGGSGG ( BBa_K4165236 ),Tau Binding Peptide WWW ( BBa_K4165007) . Our Clamp design was based on our project aim for binding with Tau and amyloid beta for further degradation.
Usage and Biology
According to Previous Research results, Our binding peptides proved to have dual effect of binding to both Tau and amyloid beta . According to this , we designed our clamps consists of with various linker lengths and peptides parts for further validation of this theory and analysis by wet-lab and dry lab results. According to our project Criteria , our clamps supposed to have binding affinity for tau and amyloid beta higher enough to make the inhibitor (BBa_K4165008) , (BBa_K4165010) unbind from catalytic domain of HTRA1 protease system (BBa_K4165004).
3D Modeling and Ranking
TRRosetta models this composite part with a score of 4 out of 6 according to our quality assessment code (you can find the python script file on the programming club page with further explanation of how you can optimize it to your needs).
Figure 1. The 3D structure of Clamp 18 modeled by TRrosetta
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]