Difference between revisions of "Part:BBa K4197020"

 
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<partinfo>BBa_K4197020 short</partinfo>
 
<partinfo>BBa_K4197020 short</partinfo>
  
Gene fusion to express the peanut allergen Ara h 2 on the surface of red fluorescent E. coli.
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OmpA_Ara h 2 fusion + mSCARLET-I with ihfb800 promoter
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<html>
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<h2>Introduction</h2>
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<p>The part expressing the gene of arachid Ara h 2 (<a href="https://parts.igem.org/Part:BBa_K4197008">K4197008</a>) has been completed with the ihfb800-mScarlet construction (<a href="https://parts.igem.org/Part:BBa_K4197022">K4197022</a>) to express red
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fluorescence. This red fluorescence allows sorting of bacteria by FACS.  </p>
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<h2>Construction</h2>
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<p>The ihfb800-mScarlet construction was amplified by PCR with the high-fidelity Phusion polymerase using IF3_mSCARLET-I F (ttatttgtacagttcatccataccacc) and
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IF4_mSCARLET-I R (atggtttctaaaggtgaagcagtg) primers. The expected size of the amplicon is 699 bp. The fragment was inserted on the linearized plasmid pET21b(+) with
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Ara h 2 (<a href="https://parts.igem.org/Part:BBa_K4197008">K4197008</a>) by In-Fusion.  </p>
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<p>The resulting products were transformed into Stellar cells and positive transformants were selected.</p>
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<h2>Validation</h2>
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<p>Successful colonies have shown bright pink fluorescence (Figure 1).</p>
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<div class="center">
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    <div class="thumb tnone">
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        <div class="thumbinner" style="width:80%;">
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            <a href="https://static.igem.wiki/teams/4197/wiki/results/facs/fig-56-mscarlet-petri.jpg" class="image">
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                <img alt="" src="https://static.igem.wiki/teams/4197/wiki/results/facs/fig-56-mscarlet-petri.jpg" width="100%" height=auto class="thumbimage" /></a>                  <div class="thumbcaption">
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                <div class="magnify">
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                    <a href="https://static.igem.wiki/teams/4197/wiki/results/facs/fig-56-mscarlet-petri.jpg" class="internal" title="Enlarge"></a>
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                </div>
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                <b>Figure 2: </b><b>Second plating of pET-21 b (+)_Ara h 2_OmpA_mScarlet-I transformed cells and pET-21 b (+)_Ana o 3_OmpA_mScarlet-I transformed Stellar cells. </b> 
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                The colonies were selected on LB-ampicillin plates. Pink coloring indicates the expression of the mScarlet-I.
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            </div>
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        </div>
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    </div>
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</div>
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<h2>References</h2>
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<ol>
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<li> <a href="https://parts.igem.org/Part:BBa_K4197008">K4197008</a> </li>
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<li> <a href="https://parts.igem.org/Part:BBa_K4197022">K4197022</a> </li>
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<li> <a href="https://2022.igem.wiki/toulouse-insa-ups/index.html"> DAISY (INSA-UPS 2022)</a> </li>
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</ol>
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</html>
  
 
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
<partinfo>BBa_K4197020 SequenceAndFeatures</partinfo>
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<partinfo>BBa_K4197003 SequenceAndFeatures</partinfo>
  
  
 
<!-- Uncomment this to enable Functional Parameter display  
 
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===Functional Parameters===
 
===Functional Parameters===
<partinfo>BBa_K4197020 parameters</partinfo>
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<partinfo>BBa_K4197003 parameters</partinfo>
 
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Revision as of 22:12, 8 October 2022


Ara h 2 expression at the surface of E. coli cells sortable by FACS using mSCARLET-I

OmpA_Ara h 2 fusion + mSCARLET-I with ihfb800 promoter

Introduction

The part expressing the gene of arachid Ara h 2 (K4197008) has been completed with the ihfb800-mScarlet construction (K4197022) to express red fluorescence. This red fluorescence allows sorting of bacteria by FACS.

Construction

The ihfb800-mScarlet construction was amplified by PCR with the high-fidelity Phusion polymerase using IF3_mSCARLET-I F (ttatttgtacagttcatccataccacc) and IF4_mSCARLET-I R (atggtttctaaaggtgaagcagtg) primers. The expected size of the amplicon is 699 bp. The fragment was inserted on the linearized plasmid pET21b(+) with Ara h 2 (K4197008) by In-Fusion.

The resulting products were transformed into Stellar cells and positive transformants were selected.

Validation

Successful colonies have shown bright pink fluorescence (Figure 1).

Figure 2: Second plating of pET-21 b (+)_Ara h 2_OmpA_mScarlet-I transformed cells and pET-21 b (+)_Ana o 3_OmpA_mScarlet-I transformed Stellar cells. The colonies were selected on LB-ampicillin plates. Pink coloring indicates the expression of the mScarlet-I.

References

  1. K4197008
  2. K4197022
  3. DAISY (INSA-UPS 2022)

Sequence and Features


Assembly Compatibility:
  • 10
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    Illegal PstI site found at 342
  • 12
    INCOMPATIBLE WITH RFC[12]
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    Illegal EcoRI site found at 1741
    Illegal NheI site found at 1703
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    Illegal NotI site found at 1519
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  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 1527
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    Illegal BglII site found at 1592
    Illegal BamHI site found at 1735
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  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 1527
    Illegal EcoRI site found at 1741
    Illegal XbaI site found at 1512
    Illegal XbaI site found at 1658
    Illegal PstI site found at 213
    Illegal PstI site found at 224
    Illegal PstI site found at 342
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 1527
    Illegal EcoRI site found at 1741
    Illegal XbaI site found at 1512
    Illegal XbaI site found at 1658
    Illegal PstI site found at 213
    Illegal PstI site found at 224
    Illegal PstI site found at 342
    Illegal AgeI site found at 329
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    Illegal AgeI site found at 1472
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 2368