Difference between revisions of "Part:BBa K4165107"
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                   Figure 1.: 3D Model of H1C peptide Modelled by AlphaFold2.0 displayed in Pyomol  
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                   Figure 1.: 3D Model of H1M peptide Modelled by AlphaFold2.0 displayed in Pyomol  
  
 
<partinfo>BBa_K4165107 parameters</partinfo>
 
<partinfo>BBa_K4165107 parameters</partinfo>
 
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Revision as of 20:40, 6 October 2022


HTRA Binding Peptide 13

part encodes for a synthetic peptide that binds to the PDZ domain of HTRA1 protein

Usage and Biology

Synthetic peptide acquired by Phage display, Binds specifically to PDZ domain of HTRA1 and HTRA3 Proteins with G of –6.9 and IC50 of 40 ± 5 Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Functional Parameters

Got score of 5 out of 6 in our Quality assessment code after modeling by AlphaFold2.0

cbeta_deviations = 0, clashscore = 0, molprobity = 1.42, ramachandran_favored = 60, ramachandran_outliers = 20, Qmean_4 = -3.533754, Qmean6 = -1.924678

Modeling


                 Figure 1.: 3D Model of H1M peptide Modelled by AlphaFold2.0 displayed in Pyomol