Difference between revisions of "Part:BBa K4239005"
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<partinfo>BBa_K4239005 short</partinfo>
 
<partinfo>BBa_K4239005 short</partinfo>
  
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fiatluxE is made to be used with fiatluxC and fiatluxD. It codes for a subpart fatty acid reductase. With the subparts coding from fiatluxC and fiatluxD, they form a complex that recycles fatty acids to fatty aldehydes. Fatty aldehydes will be used as a substrat for the luciferase protein.
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<html>
  
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The systeme fiatluxC/fiatluxD/fiatluxE is made to be used with fiatluxA and fiatluxB, gathered in the fiatluxCDABE operon.
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<br>
  
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Fiatlux genes come from ilux genes (C, D, A, B, E). They were modified to remove every Igem restriction site (EcoR1, Xba1, Spe1 and Pst1) included in genes. They were also adapted to include the biobrick format.
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<h2>Description</h2>
  
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The ilux operon was born from a mutated natural luminescence operon present in the bacteria P.luminescens: the lux operon. These mutations were error-prone PCR induced according to Gregor et al.’s study in 2018 (Gregor et al. 2018). The aim was to create a system of genes that produced more light.
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<p><i>fiatluxE</i> is made to be used with
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<i>fiatluxC</i> <a href="https://parts.igem.org/Part:BBa_K239001" class="pr-0" target="_blank">(BBa_K239001)</a>
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and <i>fiatluxD</i> <a href="https://parts.igem.org/Part:BBa_K239002" class="pr-0" target="_blank">(BBa_K239002)</a>.
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It codes for a subpart fatty acid reductase. With the subparts coding from <i>fiatluxC</i> and <i>fiatluxD</i>, they form a complex that recycles fatty acids to fatty aldehydes. Fatty aldehydes will be used as a substrat for the luciferase protein.</p>
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<p>The systeme <i>fiatluxC/fiatluxD/fiatluxE</i> is made to be used with
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<i>fiatluxA</i> <a href="https://parts.igem.org/Part:BBa_K239003" class="pr-0" target="_blank">(BBa_K239003)</a>
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and <i>fiatluxB</i> <a href="https://parts.igem.org/Part:BBa_K239004" class="pr-0" target="_blank">(BBa_K239004)</a>,
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gathered in the <i>fiatluxCDABE</i> <a href="https://parts.igem.org/Part:BBa_K239008" class="pr-0" target="_blank">(BBa_K239008)</a>
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operon.</p>
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<p><i>Fiatlux</i> genes come from <i>ilux</i> genes (C, D, A, B, E). They were modified to remove every Igem restriction site (EcoR1, Xba1, Spe1 and Pst1) included in genes. They were also adapted to include the biobrick format.</p>
 +
 
 +
<p>The <i>ilux</i> operon was born from a mutated natural luminescence operon present in the bacteria P.luminescens: the <i>lux</i> operon. These mutations were error-prone PCR induced according to Gregor et al.’s study in 2018 (Gregor et al. 2018). The aim was to create a system of genes that produced more light than the <i>lux</i> system.</p>
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<br>
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</html>
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<h2>Sequence and Features</h2>
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<partinfo>BBa_K4239005 SequenceAndFeatures</partinfo>
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<html>
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<br>
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<h2>Construction</h2>
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<p>The <i>ilux</i> operon was available in a pGEX plasmid. <i>fiatluxA, fiatluxB</i> and <i>fiatluxE</i> were directly constructed together in <i>fiatluxABE</i>. Igem restriction sites were successfully removed in the <i>iluxABE</i> genes by following these steps: DNA extraction, PCR directed mutagenesis, agarose gel analysis with green gel, and gel purification. An overlap PCR was performed to reconstitute <i>iluxABE</i> fragments which had been cut by the restriction enzymes. The part is now called <i>fiatluxABE</i> This part was then cloned and transformed in a pSB1C3 (already in iGEM biobrick format) and pBAD18 (high-copy vector with an arabinose inducible promoter) plasmids in E.coli DH5α. More details about the construction are on the following page
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<i>fiatluxABE</i> <a href="https://parts.igem.org/Part:BBa_K239007" class="pr-0" target="_blank">(BBa_K239007)</a>.
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<br>
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<h2>References</h2>
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<p><i> Gregor C, Gwosch KC, Sahl SJ, Hell SW. Strongly enhanced bacterial bioluminescence with the ilux operon for single-cell imaging. Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):962-967. doi: 10.1073/pnas.1715946115. Epub 2018 Jan 16. PMID: 29339494; PMCID: PMC5798359.</i> </p>
  
  
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<span class='h3bb'>Sequence and Features</span>
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<partinfo>BBa_K4239005 SequenceAndFeatures</partinfo>
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Revision as of 07:50, 10 October 2022


Enhanced luciferase substrate forming unit fiatluxE


Description

fiatluxE is made to be used with fiatluxC (BBa_K239001) and fiatluxD (BBa_K239002). It codes for a subpart fatty acid reductase. With the subparts coding from fiatluxC and fiatluxD, they form a complex that recycles fatty acids to fatty aldehydes. Fatty aldehydes will be used as a substrat for the luciferase protein.

The systeme fiatluxC/fiatluxD/fiatluxE is made to be used with fiatluxA (BBa_K239003) and fiatluxB (BBa_K239004), gathered in the fiatluxCDABE (BBa_K239008) operon.

Fiatlux genes come from ilux genes (C, D, A, B, E). They were modified to remove every Igem restriction site (EcoR1, Xba1, Spe1 and Pst1) included in genes. They were also adapted to include the biobrick format.

The ilux operon was born from a mutated natural luminescence operon present in the bacteria P.luminescens: the lux operon. These mutations were error-prone PCR induced according to Gregor et al.’s study in 2018 (Gregor et al. 2018). The aim was to create a system of genes that produced more light than the lux system.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 588
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Construction

The ilux operon was available in a pGEX plasmid. fiatluxA, fiatluxB and fiatluxE were directly constructed together in fiatluxABE. Igem restriction sites were successfully removed in the iluxABE genes by following these steps: DNA extraction, PCR directed mutagenesis, agarose gel analysis with green gel, and gel purification. An overlap PCR was performed to reconstitute iluxABE fragments which had been cut by the restriction enzymes. The part is now called fiatluxABE This part was then cloned and transformed in a pSB1C3 (already in iGEM biobrick format) and pBAD18 (high-copy vector with an arabinose inducible promoter) plasmids in E.coli DH5α. More details about the construction are on the following page fiatluxABE (BBa_K239007).

References

Gregor C, Gwosch KC, Sahl SJ, Hell SW. Strongly enhanced bacterial bioluminescence with the ilux operon for single-cell imaging. Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):962-967. doi: 10.1073/pnas.1715946115. Epub 2018 Jan 16. PMID: 29339494; PMCID: PMC5798359.