Difference between revisions of "Part:BBa K4399012"
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The reaction ware incubated in a thermocyler for: 37℃ 3 min, 16 ℃ 4 min, 32 cycles; 16℃ 15 min; 50℃ 5 min, 80℃ 5 min. 10 ul of the liagations were used to transform E. coli. Positive clines were confirmed by sequencing and PCR. | The reaction ware incubated in a thermocyler for: 37℃ 3 min, 16 ℃ 4 min, 32 cycles; 16℃ 15 min; 50℃ 5 min, 80℃ 5 min. 10 ul of the liagations were used to transform E. coli. Positive clines were confirmed by sequencing and PCR. | ||
| + | [[File: K4399012-Fig1.png|600px|thumb|center| '''Fig 1. Nucleic acid gel electrophoresis results of BBa_K4399012 and BBa_K4399013.''' | ||
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| + | Line 1-4, PCR results of 4 single colonies of BBa_K4399013 using SbMYB primers; | ||
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| + | Line 5-8, PCR results of 4 single colonies of BBa_K4399012 using SbMYB primers; | ||
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| + | Line 9, positive control; | ||
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| + | Line 10, negative control; | ||
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| + | Line 11, marker; | ||
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| + | Line 11-14, PCR results of 4 single colonies of BBa_K4399013 using SbDEL primers; | ||
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| + | Line 15-18, PCR results of 4 single colonies of BBa_K4399012 using SbDEL primers; | ||
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| + | Line 19, positive control; | ||
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| + | Line 20, negative control; | ||
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| + | Line 21, marker.]] | ||
<!-- Uncomment this to enable Functional Parameter display | <!-- Uncomment this to enable Functional Parameter display | ||
===Functional Parameters=== | ===Functional Parameters=== | ||
<partinfo>BBa_K4399012 parameters</partinfo> | <partinfo>BBa_K4399012 parameters</partinfo> | ||
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Revision as of 16:59, 4 October 2022
The inducible anthocyanin biosynthesis system
It is an inducible anthocyanin biosynthesis system, which contains a constitutive GFP expression box, an inducible SbMYB75 expression box, an inducible SbDEL expression box and a constitutive XVE expression box.
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal EcoRI site found at 1342
Illegal EcoRI site found at 5513
Illegal XbaI site found at 696
Illegal XbaI site found at 1579
Illegal XbaI site found at 8415
Illegal PstI site found at 2759
Illegal PstI site found at 4179
Illegal PstI site found at 4264
Illegal PstI site found at 8599
Illegal PstI site found at 8770 - 12INCOMPATIBLE WITH RFC[12]Illegal EcoRI site found at 1342
Illegal EcoRI site found at 5513
Illegal NheI site found at 1244
Illegal PstI site found at 2759
Illegal PstI site found at 4179
Illegal PstI site found at 4264
Illegal PstI site found at 8599
Illegal PstI site found at 8770 - 21INCOMPATIBLE WITH RFC[21]Illegal EcoRI site found at 1342
Illegal EcoRI site found at 5513
Illegal BglII site found at 4113
Illegal BglII site found at 4925
Illegal BglII site found at 6994
Illegal BglII site found at 7321
Illegal BglII site found at 8549
Illegal BamHI site found at 3547
Illegal BamHI site found at 3849
Illegal BamHI site found at 5168
Illegal BamHI site found at 5237
Illegal BamHI site found at 8118
Illegal XhoI site found at 7525 - 23INCOMPATIBLE WITH RFC[23]Illegal EcoRI site found at 1342
Illegal EcoRI site found at 5513
Illegal XbaI site found at 696
Illegal XbaI site found at 1579
Illegal XbaI site found at 8415
Illegal PstI site found at 2759
Illegal PstI site found at 4179
Illegal PstI site found at 4264
Illegal PstI site found at 8599
Illegal PstI site found at 8770 - 25INCOMPATIBLE WITH RFC[25]Illegal EcoRI site found at 1342
Illegal EcoRI site found at 5513
Illegal XbaI site found at 696
Illegal XbaI site found at 1579
Illegal XbaI site found at 8415
Illegal PstI site found at 2759
Illegal PstI site found at 4179
Illegal PstI site found at 4264
Illegal PstI site found at 8599
Illegal PstI site found at 8770 - 1000COMPATIBLE WITH RFC[1000]
Results
Construction of level-0 vectors
The DNA elements (golden gate compatible, promoters: PAtUBI5, PLexA35S, P2×35S; CDS of Genes: GFP, SbMYB75, SbDEL, XVE; Terminators: Tmas, Thsp18.2, Tnos, T35S) were synthesized by Gensript based on their sequences and were sub-cloned into pUC57.
Construction of level-1 vectors
The level-0 vectors were then used to construct Level-1 vectors: pEC47732: PAtUBI5-GFP-Tmas, pEC47742: PLexA35S-SbMYB75- Thsp18.2, pEC47751: PLexA35S-SbDEL-Tnos, pEC47761: P2×35S-XVE-T35S, according to the protocol:
| volume / μL | |
|---|---|
| level-1 empty vector (200 ng/μL) | 1.0 |
| promoter | 1.5 |
| CDS | 1.5 |
| terminator | 1.5 |
| NEB T4 buffer | 1.5 |
| BSA (10×) | 1.5 |
| T4 ligase | 0.5 |
| BsaI | 0.5 |
| ddH2O | 10.0 |
| the whole volume | 20.0 |
The reaction ware incubated in a thermocyler for: 37℃ 3 min, 16 ℃ 4 min， 32 cycles；16℃ 15 min；50℃ 5 min，80℃ 5 min. 10 μl of the liagations were used to transform E. coli. Positive clines were confirmed by sequencing.
Construction of level-2 vectors
Level-2 vectors were constructed based on level-1 vectors:
| IA | NC | |
|---|---|---|
| volume / μL | volume / μL | |
| level-2 empty vector (200 ng/μL) | 1.0 | 1.0 |
| L1-P1 | 1.5 | 1.5 |
| L1-P2 | 1.5 | 1.5 |
| L1-P3 | 1.5 | 1.5 |
| L1-P4 | 1.5 | - |
| ELE-X | 1.5 | 1.5 |
| NEB T4 buffer | 1.5 | 1.5 |
| BSA (10×) | 1.5 | 1.5 |
| T4 ligase (NEB) | 0.5 | 0.5 |
| BsaI | 0.5 | 0.5 |
| ddH2O | 7.5 | 9 |
| the whole volume | 20.0 | 10.0 |
The reaction ware incubated in a thermocyler for: 37℃ 3 min, 16 ℃ 4 min, 32 cycles; 16℃ 15 min; 50℃ 5 min, 80℃ 5 min. 10 ul of the liagations were used to transform E. coli. Positive clines were confirmed by sequencing and PCR.
