Difference between revisions of "Part:BBa K4477014"

 
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<partinfo>BBa_K4477014 short</partinfo>
 
<partinfo>BBa_K4477014 short</partinfo>
  
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This sequence codes for a heavy chain variable fragment (VHH), also known as a nanobody, that binds to the Fc region of murine IgGs. The sequence contains a promoter, RBS, gene sequence of nanobody, and terminator.
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This sequence codes for a heavy chain variable fragment (VHH), also known as a nanobody, that binds to the Fc region of mouse (murine) IgGs. Team Virginia 2022 designed this VHH for use as a secondary antibody to capture the hybrid human/mouse anti-oxLDL antibody we designed (BBa_K4477011). This VHH will serve excellently as a secondary antibody in a wide array of laboratory procedures such as Western blot for teams whose primary antibodies are murine in origin, among other potential applications.
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Like the other composite parts designed by Virginia 2022, this part is expressed by IPTG induction. First, a strong T7 promoter occurs on the 5' end of the DNA sequence, facilitating IPTG induction. Then, an RBS the team optimized using the Salis RBS calculator for expression of the nanobody coding sequence occurs. The coding sequence for the nanobody occurs six base pairs downstream of the 3' end of the RBS, as recommended by [choose one of many sources] for optimal ribosomal translation. Lastly, a two-way terminator completes the composite part; as a two-way terminator, it not only prevents RNA polymerases from reading past the composite part into the backbone, but prevents any genes in the backbone from being transcribed into the composite part and interfering with their expression. Note that between each subcomponent, legal restriction enzyme sites were included for modularity.
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The sequence of the VHH contains a promoter, RBS, codinng sequence of the nanobody, and terminator; in essence, a complete expression cassette. Like the other composite parts designed by Virginia 2022, this part is designed for expression by IPTG induction. First, a strong T7 promoter occurs on the 5' end of the DNA sequence, facilitating IPTG induction. Then, an RBS the team optimized using the Salis RBS calculator for expression of the nanobody coding sequence occurs. The coding sequence for the nanobody occurs eight base pairs downstream of the 3' end of the RBS for optimal ribosomal translation. Lastly, a two-way terminator completes the composite part; as a two-way terminator, it not only prevents RNA polymerases from reading past the composite part into the backbone, but prevents any genes in the backbone from being transcribed into the composite part and interfering with their expression. Note that between each subcomponent, legal restriction enzyme sites were included for modularity.
  
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<!-- Add more about the biology of this part here
 
 
===Usage and Biology===
 
===Usage and Biology===
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This VHH antibody fragment is an anti-mouse IgG1 Fc-specific nanobody, a single-domain antibody derived from camelid heavy-chain antibodies (VHH). It is a secondary antibody that binds to the kappa chain, is monovalent, and does not cross-link with primary antibodies. This VHH has better detection signals than a commonly used commercially available polyclonal secondary antibody.
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The VHH is intended to serve as a HRP-conjugated secondary antibody to be produced in <em>E. coli</em>. This allows current polyclonal secondary antibodies produced from animal immunization to be replaced with antibodies produced in <em>E. coli</em>, a much more sustainable and standardized method for the industry.
  
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K4477014 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K4477014 SequenceAndFeatures</partinfo>

Revision as of 13:38, 12 October 2022


Anti-mouse camelid VHH - complete expression cassette

This sequence codes for a heavy chain variable fragment (VHH), also known as a nanobody, that binds to the Fc region of mouse (murine) IgGs. Team Virginia 2022 designed this VHH for use as a secondary antibody to capture the hybrid human/mouse anti-oxLDL antibody we designed (BBa_K4477011). This VHH will serve excellently as a secondary antibody in a wide array of laboratory procedures such as Western blot for teams whose primary antibodies are murine in origin, among other potential applications.

The sequence of the VHH contains a promoter, RBS, codinng sequence of the nanobody, and terminator; in essence, a complete expression cassette. Like the other composite parts designed by Virginia 2022, this part is designed for expression by IPTG induction. First, a strong T7 promoter occurs on the 5' end of the DNA sequence, facilitating IPTG induction. Then, an RBS the team optimized using the Salis RBS calculator for expression of the nanobody coding sequence occurs. The coding sequence for the nanobody occurs eight base pairs downstream of the 3' end of the RBS for optimal ribosomal translation. Lastly, a two-way terminator completes the composite part; as a two-way terminator, it not only prevents RNA polymerases from reading past the composite part into the backbone, but prevents any genes in the backbone from being transcribed into the composite part and interfering with their expression. Note that between each subcomponent, legal restriction enzyme sites were included for modularity.

Usage and Biology

This VHH antibody fragment is an anti-mouse IgG1 Fc-specific nanobody, a single-domain antibody derived from camelid heavy-chain antibodies (VHH). It is a secondary antibody that binds to the kappa chain, is monovalent, and does not cross-link with primary antibodies. This VHH has better detection signals than a commonly used commercially available polyclonal secondary antibody.

The VHH is intended to serve as a HRP-conjugated secondary antibody to be produced in E. coli. This allows current polyclonal secondary antibodies produced from animal immunization to be replaced with antibodies produced in E. coli, a much more sustainable and standardized method for the industry.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]