Difference between revisions of "Part:BBa K3887009"
Line 5: Line 5:
  
 
Fre-L3-SttH
 
Fre-L3-SttH
 +
 +
===Description===
 +
SttH is an halogenases used during the conversion of indole or Tryptophan. It exhibits regiospecificitiy for both bromination and chloroindole at C6. However, when SttH overexpressed in vitro, most of the enzyme were exist in the precipitation for its low solubility. To improve this problem, we add Fre to increase its solubility with a rigid linker L3. Below is the gene circuit we used in our project.
 +
 +
[[File:T--BJU_China--Fig.1 SttH1.png|600px|thumb|center]]
 +
<p  class="figure-description"><b><center>Figure 1. Gene circuit of Fre-L3-SttH</center></b></p>
 +
 +
===Experiments and Results===
 +
We constructed halogenase plasmids using Gibson Assembly and verified by colony PCR and gene sequencing . According to the results in Figure 2, we can roughly identify the Fre-L3-SttH gene comparing with DNA Marker. And then the PCR product fragments were sent for sequencing and the results were also consistent with our target fragments.
 +
[[File:T--BJU_China--Fig.2 SttH2.png|600px|thumb|center]]
 +
<p  class="figure-description"><b><center> Figure 2. Molecular identification of Fre-L3-SttH</center></b></p>
 +
 +
Next, we want to test the expression of Fre-L3-SttH with IPTG induction. For better expression of enzymes, we optimize the induction condition of gene expression: three different temperatures (18℃, 30℃, 37℃) and inducer concentrations (0.1mM, 1mM, 5mM) were set for test. Additionally, since the 6-halogenase Fre-L3-SttH is a fusion enzyme (including core enzyme SttH，co-enzyme Fre and rigid linker L3) with higher solubility, we disrupted collected cells and tested both pellet and supernatant after induction (Figure 4).
 +
 +
[[File:T--BJU_China--Fig.3 SttH3.png|600px|thumb|center]]
 +
<p  class="figure-description"><b><center> Figure 3. SDS-PAGE Gel of Fre-L3-SttH (Left is supernatant, Right is precipitation) </center></b></p>
 +
From the results in Figure 4, we can see that Fre-L3-SttH was successfully expressed (arrow points). SttH induced by IPTG could express well at three different temperatures, and as the temperature increases, the expression level also gradually increases. There is no significant difference in the expression level of SttH at 37°C with 0.1, 1, and 5 mM IPTG, and the amount of protein is significantly more compared to the other two temperatures, so we can speculate that the optimal temperature for the expression of SttH is 37°C.
 +
Meanwhile, though we made a fusion enzyme to improve SttH expression solubility, part of the enzymes could not be dissolved after expression and remained in the precipitation.
 +
We also did a fermentation experiment on 6,6-dichloroindigo using Fre-L3-SttH. According to the result, our manufacture of indigo derivatives was a great success.
 +
[[File:T--BJU_China--Fig.4 SttH4.png|600px|thumb|center]]
 +
<p  class="figure-description"><b><center> Figure 4. Fermentation Results of Fre-L3-SttH (Left is supernatant, Right is precipitation) </center></b></p>
 +
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Revision as of 03:40, 20 October 2021


Fre-L3-SttH


Fre-L3-SttH

Description

SttH is an halogenases used during the conversion of indole or Tryptophan. It exhibits regiospecificitiy for both bromination and chloroindole at C6. However, when SttH overexpressed in vitro, most of the enzyme were exist in the precipitation for its low solubility. To improve this problem, we add Fre to increase its solubility with a rigid linker L3. Below is the gene circuit we used in our project.

T--BJU China--Fig.1 SttH1.png

Figure 1. Gene circuit of Fre-L3-SttH

Experiments and Results

We constructed halogenase plasmids using Gibson Assembly and verified by colony PCR and gene sequencing . According to the results in Figure 2, we can roughly identify the Fre-L3-SttH gene comparing with DNA Marker. And then the PCR product fragments were sent for sequencing and the results were also consistent with our target fragments.

T--BJU China--Fig.2 SttH2.png

Figure 2. Molecular identification of Fre-L3-SttH

Next, we want to test the expression of Fre-L3-SttH with IPTG induction. For better expression of enzymes, we optimize the induction condition of gene expression: three different temperatures (18℃, 30℃, 37℃) and inducer concentrations (0.1mM, 1mM, 5mM) were set for test. Additionally, since the 6-halogenase Fre-L3-SttH is a fusion enzyme (including core enzyme SttH，co-enzyme Fre and rigid linker L3) with higher solubility, we disrupted collected cells and tested both pellet and supernatant after induction (Figure 4).

T--BJU China--Fig.3 SttH3.png

Figure 3. SDS-PAGE Gel of Fre-L3-SttH (Left is supernatant, Right is precipitation)

From the results in Figure 4, we can see that Fre-L3-SttH was successfully expressed (arrow points). SttH induced by IPTG could express well at three different temperatures, and as the temperature increases, the expression level also gradually increases. There is no significant difference in the expression level of SttH at 37°C with 0.1, 1, and 5 mM IPTG, and the amount of protein is significantly more compared to the other two temperatures, so we can speculate that the optimal temperature for the expression of SttH is 37°C. Meanwhile, though we made a fusion enzyme to improve SttH expression solubility, part of the enzymes could not be dissolved after expression and remained in the precipitation. We also did a fermentation experiment on 6,6-dichloroindigo using Fre-L3-SttH. According to the result, our manufacture of indigo derivatives was a great success.

T--BJU China--Fig.4 SttH4.png

Figure 4. Fermentation Results of Fre-L3-SttH (Left is supernatant, Right is precipitation)


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 1813
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 942
    Illegal NgoMIV site found at 1200
    Illegal NgoMIV site found at 1903
    Illegal NgoMIV site found at 2169
    Illegal AgeI site found at 1088
    Illegal AgeI site found at 1429
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 301
    Illegal SapI.rc site found at 421