Difference between revisions of "Part:BBa K3997001"
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<partinfo>BBa_K3997001 short</partinfo> | <partinfo>BBa_K3997001 short</partinfo> | ||
− | MHETase | + | promoter |
+ | |||
+ | === Profile === | ||
+ | |||
+ | ==== Name: MHETase ==== | ||
+ | ==== Base Pairs: 1752 bp ==== | ||
+ | ==== Origin: Ideonella sakaiensis 201-F6 ==== | ||
+ | ==== Properties: hydrolysis of MHET. ==== | ||
+ | |||
+ | === Usage and Biology === | ||
+ | |||
+ | |||
+ | |||
+ | Polyethylene terephthalate (PET) is the most widely produced polyester plastic and its accumulation in the environment has become a global concern. At the same time, the daily intake of microplastics by humans is gradually increasing, which damages human health. Therefore, researchers believe that it is important to develop an environmental-friendly plastic degradation method by using microorganisms. Recently, a novel bacterial strain called Ideonella sakaiensis 201-F6 has been discovered that produces a couple of unique enzymes, PETase and MHETase, enabling the bacteria to utilize PET as their sole carbon source. | ||
+ | |||
+ | Figure 1. Action and function of MHETase in MHET degradation. | ||
+ | |||
+ | The enzyme MHETase is a hydrolase, and it represents a key step in the process of microbial PET degradation in I. sakaiensis. It cleaves monoterephthalic acid, the PET degradation product by PETase, to ethylene glycol and terephthalic acid, and it is crucial for hydrolysis of MHET. | ||
+ | |||
+ | |||
+ | |||
+ | [[File:T--WFLA YK PAO--BBa K3997001-Figure1.jpg|500px|thumb|center|Figure 1...]] | ||
+ | |||
+ | |||
+ | |||
+ | We attempt to express the MHETase in E. coli strain to express and purify the protein to test its activity of degradation the MHET (Figure 1). So as to set up a method of environmental-friendly plastic degradation. | ||
+ | |||
+ | |||
+ | === Experimental approach === | ||
+ | |||
+ | |||
+ | |||
+ | Production, purification, and activity analysis of MHETase | ||
+ | |||
+ | 1. Construction of pET28a-MHETase | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | [[File:T--WFLA YK PAO--BBa K3997001-Figure2.png|500px|thumb|center|Figure 2. Gel electrophoresis of MHETase PCR products...]] | ||
+ | |||
+ | |||
+ | |||
+ | 2. Purification of MHETase( ~65.17 kDa)_BL21(DE3) | ||
+ | |||
+ | In order to present the function of the part, the MHETase gene was expressed in E. coli under the control of T7 promoter. Then the bacterial cells are collected and crushed, The samples of whole expression cell lysate, supernatant and pellet of cell lysate were analyzed using SDS-PAGE and Western blot (only for his-tag proteins from pET28a vector), which is found in the corresponding protein band of approximately 65kDa (Figure 3). | ||
+ | |||
+ | |||
+ | [[File:T--WFLA YK PAO--BBa K3997001-Figure3.PNG|500px|thumb|center|Fig.3 SDS-PAGE (left) and western blot (right) analysis for MHETase cloned in pET28a and expressed in BL21(DE3) strain...]] | ||
+ | |||
+ | |||
+ | |||
+ | Lane M1: Protein marker | ||
+ | |||
+ | Lane M2: Western blot marker | ||
+ | |||
+ | Lane PC1: BSA (1μg) | ||
+ | |||
+ | Lane PC2: BSA (2μg) | ||
+ | |||
+ | Lane NC: Cell lysate without induction | ||
+ | |||
+ | Lane 1: Cell lysate with induction for 16h at 15oC | ||
+ | |||
+ | Lane 2: Cell lysate with induction for 4 h at 37oC | ||
+ | |||
+ | Lane NC1: Supernatant of cell lysate without induction | ||
+ | |||
+ | Lane 3: Supernatant of cell lysate with induction for 16h at 15oC | ||
+ | |||
+ | Lane 4: Supernatant of cell lysate with induction for 4 h at 37oC | ||
+ | |||
+ | Lane NC2: Pellet of cell lysate without induction | ||
+ | |||
+ | Lane 5: Pellet of cell lysate with induction for 16h at 15oC | ||
+ | |||
+ | Lane 6: Pellet of cell lysate with induction for 4 h at 37oC | ||
+ | |||
+ | The primary antibody for western blot is anti-His antibody | ||
+ | |||
+ | |||
+ | |||
+ | In this project,western blot (right) analysis for MHETase was cloned in pET28a, the primary antibody for western blot is anti-His antibody. MHETase -His protein was successfully expressed. | ||
+ | |||
+ | |||
+ | [[File:T--WFLA YK PAO--BBa K3997001-Figure4.jpg|500px|thumb|center|Figure4. SDS-PAGE of MHETase-his...]] | ||
+ | |||
+ | |||
+ | |||
+ | [[File:T--WFLA YK PAO--BBa K3997001-Figure5.png|500px|thumb|center|Fig.5 SDS-PAGE (left) analysis for MHETase cloned in pGEX-6P-1 and expressed in BL21(DE3) strain...]] | ||
+ | |||
+ | |||
+ | |||
+ | In addition, MHETase genes were also cloned to the expression vector pGEX-6P-1, which produce recombinant protein fusion with Glutathione-S-transferase (GST) tag. | ||
+ | |||
+ | Lane 1: MHETase Cell lysate without induction for 20 h at 16oC | ||
+ | |||
+ | Lane 2: MHETase Cell lysate with induction for 20 h at 16oC | ||
+ | |||
+ | Lane 3,4,5: GST elution fractions of purification of lane 2 by GST-affinity chromatography | ||
+ | |||
+ | |||
+ | === Proof of function === | ||
+ | |||
+ | ==== 1. Enzyme Activity Tests ==== | ||
+ | |||
+ | |||
+ | The activity of MHETase was indicated by the decline absorbances at a wavelength of 240 nm (Figure 4). The wavelength is the specific absorption of MHET. As shown in figure 2, after 1 d reaction, MHET concentration was dropped by 31.4%. | ||
+ | |||
+ | |||
+ | |||
+ | [[File:T--WFLA YK PAO--BBa K3997001-Figure6.jpg|500px|thumb|center|Figure 6. Detection of residual MHET by measuring the absorbance at 240 nm...]] | ||
+ | |||
+ | |||
+ | [[File:T--WFLA YK PAO--BBa K3997001-Figure7.jpg|500px|thumb|center|Figure 7. MHETase activity assay...]] | ||
+ | |||
+ | |||
+ | |||
+ | === References === | ||
+ | |||
+ | |||
+ | ==== 1. Shosuke Yoshida et al. A bacterium that degrades and assimilates poly(ethylene terephthalate), Science (2016). ==== | ||
+ | ==== 2. Harry P Austin. et al. Characterization and engineering of a plastic-degrading aromatic polyesterase, PNAS(2018) ==== | ||
+ | |||
+ | ==== 3. Chun-Chi Chen et al. General features to enhance enzymatic activity of poly(ethylene terephthalate) hydrolysis, Nature Catalysis(2021). ==== | ||
+ | |||
<!-- Add more about the biology of this part here | <!-- Add more about the biology of this part here |
Revision as of 06:43, 20 October 2021
MHETase
promoter
Profile
Name: MHETase
Base Pairs: 1752 bp
Origin: Ideonella sakaiensis 201-F6
Properties: hydrolysis of MHET.
Usage and Biology
Polyethylene terephthalate (PET) is the most widely produced polyester plastic and its accumulation in the environment has become a global concern. At the same time, the daily intake of microplastics by humans is gradually increasing, which damages human health. Therefore, researchers believe that it is important to develop an environmental-friendly plastic degradation method by using microorganisms. Recently, a novel bacterial strain called Ideonella sakaiensis 201-F6 has been discovered that produces a couple of unique enzymes, PETase and MHETase, enabling the bacteria to utilize PET as their sole carbon source.
Figure 1. Action and function of MHETase in MHET degradation.
The enzyme MHETase is a hydrolase, and it represents a key step in the process of microbial PET degradation in I. sakaiensis. It cleaves monoterephthalic acid, the PET degradation product by PETase, to ethylene glycol and terephthalic acid, and it is crucial for hydrolysis of MHET.
We attempt to express the MHETase in E. coli strain to express and purify the protein to test its activity of degradation the MHET (Figure 1). So as to set up a method of environmental-friendly plastic degradation.
Experimental approach
Production, purification, and activity analysis of MHETase
1. Construction of pET28a-MHETase
2. Purification of MHETase( ~65.17 kDa)_BL21(DE3)
In order to present the function of the part, the MHETase gene was expressed in E. coli under the control of T7 promoter. Then the bacterial cells are collected and crushed, The samples of whole expression cell lysate, supernatant and pellet of cell lysate were analyzed using SDS-PAGE and Western blot (only for his-tag proteins from pET28a vector), which is found in the corresponding protein band of approximately 65kDa (Figure 3).
Lane M1: Protein marker
Lane M2: Western blot marker
Lane PC1: BSA (1μg)
Lane PC2: BSA (2μg)
Lane NC: Cell lysate without induction
Lane 1: Cell lysate with induction for 16h at 15oC
Lane 2: Cell lysate with induction for 4 h at 37oC
Lane NC1: Supernatant of cell lysate without induction
Lane 3: Supernatant of cell lysate with induction for 16h at 15oC
Lane 4: Supernatant of cell lysate with induction for 4 h at 37oC
Lane NC2: Pellet of cell lysate without induction
Lane 5: Pellet of cell lysate with induction for 16h at 15oC
Lane 6: Pellet of cell lysate with induction for 4 h at 37oC
The primary antibody for western blot is anti-His antibody
In this project,western blot (right) analysis for MHETase was cloned in pET28a, the primary antibody for western blot is anti-His antibody. MHETase -His protein was successfully expressed.
In addition, MHETase genes were also cloned to the expression vector pGEX-6P-1, which produce recombinant protein fusion with Glutathione-S-transferase (GST) tag.
Lane 1: MHETase Cell lysate without induction for 20 h at 16oC
Lane 2: MHETase Cell lysate with induction for 20 h at 16oC
Lane 3,4,5: GST elution fractions of purification of lane 2 by GST-affinity chromatography
Proof of function
1. Enzyme Activity Tests
The activity of MHETase was indicated by the decline absorbances at a wavelength of 240 nm (Figure 4). The wavelength is the specific absorption of MHET. As shown in figure 2, after 1 d reaction, MHET concentration was dropped by 31.4%.
References
1. Shosuke Yoshida et al. A bacterium that degrades and assimilates poly(ethylene terephthalate), Science (2016).
2. Harry P Austin. et al. Characterization and engineering of a plastic-degrading aromatic polyesterase, PNAS(2018)
3. Chun-Chi Chen et al. General features to enhance enzymatic activity of poly(ethylene terephthalate) hydrolysis, Nature Catalysis(2021).
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 612
- 12INCOMPATIBLE WITH RFC[12]Illegal PstI site found at 612
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 495
- 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 612
- 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 612
Illegal NgoMIV site found at 180
Illegal NgoMIV site found at 294
Illegal NgoMIV site found at 750
Illegal AgeI site found at 364 - 1000COMPATIBLE WITH RFC[1000]