Difference between revisions of "Talk:Catalog"

(→‎Software tools)
(→‎Software tools)
Line 1: Line 1:
 
==Software tools==
 
==Software tools==
−
*Tool for marking parts to be included or not included in the distribution
+
#Tool for marking parts to be included or not included in the distribution
−
**This might simply just be an excel spreadsheet initially of every part, how often it is used, QC info, summed size of all part pages etc.
+
#*This might simply just be an excel spreadsheet initially of every part, how often it is used, QC info, summed size of all part pages etc.
−
*An [[/RBS strength calculator|RBS strength calculator]] should be available on RBS and coding sequence pages.
+
#An [[/RBS strength calculator|RBS strength calculator]] should be available on RBS and coding sequence pages.
−
*Being able to enter parameter values into a new table
+
#Being able to enter parameter values into a new type of tables
−
*Copy and rename functionality for column sets
+
#Copy and rename functionality for column sets
−
*Auto-translation to amino acid sequence for protein tags and modifiers
+
#Auto-translation to amino acid sequence for protein tags and modifiers
−
*Auto-detection of direction of protein coding sequences based on sequence
+
#Auto-detection of direction of protein coding sequences based on sequence
−
*Auto-detection as to whether a protein coding sequence has a start and stop codon and therefore is complete, N-terminal half, C-terminal half or a domain; as part of this the start and stop codons could be automatically annotated in the feature list
+
#Auto-detection as to whether a protein coding sequence has a start and stop codon and therefore is complete, N-terminal half, C-terminal half or a domain; as part of this the start and stop codons could be automatically annotated in the feature list
−
*Support for devices - allowing devices to be across multiple DNA fragments and with human-specified inputs and outputs
+
#Support for devices - allowing devices to be across multiple DNA fragments and with human-specified inputs and outputs
−
*Sites for transcriptional regulators should be [[/Transciptional regulator site identification|automatically identified]] for all promoters (and maybe other parts), add any identified sites as features to the promoters.
+
#A method for importing promoters (and other parts) from ecocyc (and other similar databases).
−
*Auto-detection of the swissprot and kegg database references for protein coding regions
+
#Sites for transcriptional regulators should be [[/Transciptional regulator site identification|automatically identified]] for all promoters (and maybe other parts), add any identified sites as features to the promoters.
−
*[[/Secondary structure predictor|Secondary structure predictor]] that can show a graphic of the predicted secondary structure for protein generators and terminators
+
#Auto-detection of the swissprot and kegg database references for protein coding regions
−
*A method for importing promoters (and other parts) from ecocyc (and other similar databases).
+
#[[/Secondary structure predictor|Secondary structure predictor]] that can show a graphic of the predicted secondary structure for protein generators and terminators

Revision as of 14:29, 22 January 2009

Software tools

  1. Tool for marking parts to be included or not included in the distribution
    • This might simply just be an excel spreadsheet initially of every part, how often it is used, QC info, summed size of all part pages etc.
  2. An RBS strength calculator should be available on RBS and coding sequence pages.
  3. Being able to enter parameter values into a new type of tables
  4. Copy and rename functionality for column sets
  5. Auto-translation to amino acid sequence for protein tags and modifiers
  6. Auto-detection of direction of protein coding sequences based on sequence
  7. Auto-detection as to whether a protein coding sequence has a start and stop codon and therefore is complete, N-terminal half, C-terminal half or a domain; as part of this the start and stop codons could be automatically annotated in the feature list
  8. Support for devices - allowing devices to be across multiple DNA fragments and with human-specified inputs and outputs
  9. A method for importing promoters (and other parts) from ecocyc (and other similar databases).
  10. Sites for transcriptional regulators should be automatically identified for all promoters (and maybe other parts), add any identified sites as features to the promoters.
  11. Auto-detection of the swissprot and kegg database references for protein coding regions
  12. Secondary structure predictor that can show a graphic of the predicted secondary structure for protein generators and terminators