Difference between revisions of "Part:BBa K3657018:Design"

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===Design Notes===
 
===Design Notes===
 
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The part was designed as a dimer from the original Broccoli aptamer with the use of <a href="">DesignSimple</a> in order to exclude the BsmbI cutting site and introduce the GUAGAG loop.
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The part was designed as a dimer from the original Broccoli aptamer with the use of <a href="https://github.com/igemsoftware2020/Heidelberg_2020/blob/main/CoNcoRDe/CoNcoRDe/rnasupport/scripts/design_simple.py">DesignSimple</a> in order to exclude the BsmbI cutting site and introduce the GUAGAG loop.
 
<p>Due to the COVID pandemic we were not able to experimentally prove that this Broccoli modification binds DFHBI correctly <i>in vitro</i>.</p>
 
<p>Due to the COVID pandemic we were not able to experimentally prove that this Broccoli modification binds DFHBI correctly <i>in vitro</i>.</p>
 
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Revision as of 23:18, 27 October 2020


dBroccoli Aptamer with added GUAGAG RNA Loop


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 23
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The part was designed as a dimer from the original Broccoli aptamer with the use of DesignSimple in order to exclude the BsmbI cutting site and introduce the GUAGAG loop.

Due to the COVID pandemic we were not able to experimentally prove that this Broccoli modification binds DFHBI correctly in vitro.

Source

Synthetic

References