Difference between revisions of "Part:BBa K3332023"

Revision as of 14:52, 27 October 2020

phnD

Subunit of phosphonate ABC transporter, phosphonate binding protein, from S.meliloti 1021.Use K823004 to construct a new part that can transport glyphosate to cytoplasm.

Biology

Phn system is a gene cluster for organophosphorus transport and degradation in many microorganisms. Sinorhizobium meliloti 1021 encode ABC transporter by phnEE, phnC, phnD gene, this transporter can transport glyphosate to cytoplasm. The phnC gene encodes ATP-binding protein and the phnD encodes phosphonate binding protein of the ABC transporter.

Usage

We ligased the strong promoter (BBa_J23100) and the parts (RBS-phnE1-RBS-phnE2-RBS-phnC-RBS-phnD-Terminator) on the expression vector pSB1C3 by standard assembly. Then the ligation mixture was transformed into E. coli DH5α & E. coli BL21(DE3), enabled the E. coli to transport glyphosate to cytoplasm at higher efficiency.

Characterization

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
INCOMPATIBLE WITH RFC[21]
Illegal BglII site found at 275
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal NgoMIV site found at 574
Illegal AgeI site found at 832
1000
INCOMPATIBLE WITH RFC[1000]
Illegal BsaI site found at 177
Illegal BsaI.rc site found at 511
Illegal SapI site found at 13

@@ Line 6: / Line 6: @@
 ===Biology===
-Phn system is a gene cluster for organophosphorus transport and degradation in many microorganisms. Sinorhizobium meliloti 1021 encode ABC transporter by phnEE, phnC, phnD gene, this transporter can transport glyphosate to cytoplasm. The phnC gene encodes ATP-binding protein and the phnD encodes phosphonate binding protein of the ABC transporter.
+Phn system is a gene cluster for organophosphorus transport and degradation in many microorganisms. ''Sinorhizobium meliloti'' 1021 encode ABC transporter by phnEE, phnC, phnD gene, this transporter can transport glyphosate to cytoplasm. The phnC gene encodes ATP-binding protein and the phnD encodes phosphonate binding protein of the ABC transporter.
 ===Usage===
-We ligased the strong promoter (BBa_J23100) and the parts (RBS-phnE1-RBS-phnE2-RBS-phnC-RBS-phnD-Terminator) on the expression vector pSB1C3 by standard assembly. Then the ligation mixture was transformed into E. coli DH5α & E. coli BL21(DE3), enabled the E. coli to transport glyphosate to cytoplasm at higher efficiency.
+We ligased the strong promoter (BBa_J23100) and the parts (RBS-phnE1-RBS-phnE2-RBS-phnC-RBS-phnD-Terminator) on the expression vector pSB1C3 by standard assembly. Then the ligation mixture was transformed into ''E. coli'' DH5α & ''E. coli'' BL21(DE3), enabled the ''E. coli'' to transport glyphosate to cytoplasm at higher efficiency.
 ===Characterization===