Difference between revisions of "Part:BBa K3457009"

Revision as of 03:59, 25 October 2020

CAHS 89226 with a 6X His tag

This biological is the CDS sequence of Cytosolic-abundant heat soluble protein 89226, also called CAHS 89226. It is a kind of Tardigrade intrinsically Disordered Protein (TDP). It is a heat soluble protein found from Tardigrade Hypsibius dujardini in 2017 ^[1]. Tardigrade, also called water bear, is a kind of tenacious organism. It can survive extreme environment, such as desiccation, freeze and vacuum. The super capacity of Tardigrade partially owes to TDPs. CAHS 89226 has been proven to protect the activity of purified proteins ^[1]. Here we found that expressing this protein can help bacteria survive the freeze-drying process and then the resultant dry bacteria powder can be stored for a long time at room temperature.

Contribution

Group: QHFZ-China iGEM 2020

Author: Yixian Yang

Design

Figure 1. The Schematic cartoon of the DNA construct of BBa_K3457009.

This part is the CDS of CAHS 89226. We obtained the sequence from the research paper in 2017 ^[1]. Then with the help of a company, we optimized the sequence, so that the part is suitable to work in E. coli and there is no biobrick restriction enzyme cutting site in it. Moreover, we added an 6x His tag at the N-terminal of CAHS 89226, so it can be easily detected by Western Blot and be purified by Ni-chelating affinity chromatography (Fig.1). This year, the part is used in the composite part BBa_K3457032

Documentation:

Introduction:

This year, we tried to introduce a new biopreservation method. We used freeze-drying to make the engineered into dry powder. Then the powder can be stored at room temperature for a long time. This method can make the storage of bacteria get rid of ultra-low temperature freezer, so that it will promote the practical application of engineered bacteria out of laboratory. However, the stresses during freeze-drying and subsequent dry storage, including freeze, dry and vacuum, are lethal to bacteria. We use TDPs, including CAHS 89226, to help bacteria survive the situation.

Protocol:

To test the effect of CAHS 89226, we modified a frequently and widely used vector, pet28a+ and put this part into it (Fig. 2). Then we transformed the plasmid into E. coli BL21 strain.

Figure 2. The Schematic cartoon of the vector.

Then we used the following protocols to verify its function (Fig. 3):

Figure 3. Experiment protocol.

【Day 1】Induction culture (1) Pick clones which are in good condition and put them into 500 μL LB medium with antibiotic. Then shake them to grow at 37℃ for 5~7 hours until the liquid of bacteria gets thick. (2) Add iPTG into 3μL LB medium with antibiotic until its concentration add up to 2Mm. Add 3 μL bacteria mentioned in step 1, which is to dilute the bacteria 1:1000. Shake them to grow at 37℃ overnight. 【Day 2】Freeze-dried (1) If there are fluorescence in the control group (GFP), continue conducting the experiment. (2) Use spectrophotometer to measure the OD600 of bacteria solution, OD600=1 is used as 1e9 cells. If the OD600’s numerical value is between 0.1 to 1, There is a linear relationship between OD600 and bacterial density. Calculate the volume of bacterial solution for 1e9 cells by using the formula V=100 / (OD600* Dilution ratio). (3) 1e9 cells are centrifuged at 8000 rpm for 3 min. Then pour out the upper liquid. (4) Hang the bacteria in a 15 mL shake tube with cold 100μL glucose solution. (5) Take off the cover and put the bacteria into a cold trap. Open the compressor of the lyophilization machine to freeze it for 2h at -70℃. (6) Carry the bacteria. Open the vacuum pump and vacuum gauge to dry it in vacuum for 6h at 1 Pa vacuum degree. (7) Turn off the vacuum pump, close the cover tightly, place it 2 days at room temperature. 【Day 3】Room temperature storage 【Day 4】Detect the survival rate (1) Add 1 ml sterile water into the shaking tube, vortex for 15 s, placed it under room temperature for 10 min. (2) Mix well then take 100μL(which means it has 1e8 cells) of the bacteria solution then spread the solution on the LB plate. (3) If the density above isn’t suitable, then take 100μL to spread on the LB plate after several gradient dilution. (4) Grown overnight at 37℃. 【Day 5】Cell Count (1) Take out the LB plate and take photos to record the experimental results. (2) Use the automatic cell counting function of Image J to count the colone number on the LB plate, then compared the results between each group.

Results:

First, by a reporter, sfGFP, we confirmed that the plasmid can normally expressed exogenous proteins in E. coli BL21 strain (Fig. 4). Via SDS-PAGE, we observed the band of CAHS 89226, further verified the successfully expression (Fig.5).

Figure 4. Via a reporter, sfGFP, the expression function of the modified pet28a vector was verified.

Figure 5. CAHS 89226 was expressed as expected.

Then, by freeze-drying and recover experiment, we found that compared with the control group (sfGFP), the bacteria expressing CAHS 89226 had a better survival rate (Fig. 6). We placed an enlarged picture as well (Fig. 7).

Figure 6. CAHS 89226 protected bacteria during freeze-drying and subsequent dry storage.

Figure 7. An enlarged picture of fig. 6.

Summary:

CAHS 89226 helps the bacteria survive freeze-drying and subsequent dry storage. To achieve that, you need only to transform the sequence into your bacteria. You can only use the part to express and purify CAHS 89226 through Ni-chelating affinity chromatography. The purified CAHS 89226 can be used to protect protein products.

Reference:

[1] Boothby, T.C., Tapia, H., Brozena, A.H., Piszkiewicz, S., Smith, A.E., Giovannini, I., Rebecchi, L., Pielak, G.J., Koshland, D., and Goldstein, B. (2017). Tardigrades Use Intrinsically Disordered Proteins to Survive Desiccation. Mol Cell 65, 975-984 e975.

Sequence and Features