Difference between revisions of "Part:BBa K3482038"
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<partinfo>BBa_K3482038 short</partinfo> | <partinfo>BBa_K3482038 short</partinfo> | ||
| − | + | Truncated azurin fused with a 3XFLAG tag and a pelB-D5 secretion signal peptide for protein expression and purification | |
| − | |||
===Usage and Biology=== | ===Usage and Biology=== | ||
| + | Azurin is a blue copper-binding redox protein originally found in the periplasmic membrane of Pseudomonas aeruginosa. It has recently been discovered to have an l anticancer effect by targeting the well-known p53 apoptosis pathway and by preferentially entering cancerous cells. | ||
| + | |||
| + | We used this part to test if azurin was produced in our bacteria. | ||
| + | |||
| + | ===Characterization=== | ||
| + | |||
| + | To verify the correct expression of the azurin that we successfully cloned into our sponge plasmid and purified, we concatenated a widely used 3XFLAG tag at the C-terminus of our azurin gene (BBa_3482040). This allowed us to perform a Western Blot, which allowed us to confirm the presence or absence of our expressed azurin. In addition, we modified the existing part BBa_K2500001 (truncated azurin uploaded by the ETH Zürich team of 2017) with either the secretion tag pelB or NSP4[4] and investigated its secretion capability. | ||
| + | E.coli Nissle 1917, which as been transformed with a modified sponge plasmid (usable in combination with a repressilator plasmid in the future) which contains our target genes constitutively expressed under a pTET promoter (BBa_K3482040, BBa_K3482041, BBa_K3482038, and BBa_K3482037). We then performed a western blot with overnight cultures set to OD600 of 2.0 of culture supernatant and lysate (pellet) were analyzed | ||
| + | |||
| + | [[File:BBa K3482040 azurin purification.png|400px]] | ||
| + | |||
| + | Western blot analysis of flagged azurin from 4 different parts under 2 conditions: supernatant or cell lysate as “pellet”. Size range is shown around 15 kDa. Analysis performed by the wet lab team. Immunoblotting after SDS-PAGE migration, membrane transfer, and analysis performed with 3XFLAG antibody. | ||
| + | Samples are as follow: 1 = BBa_K3482040 = azurin-3XFLAG; 2 = BBa_K3482041 = truncated azurin-3XFLAG; 3 = BBa_K3482038 = pelB-5D-truncated azurin-3XFLAG; 4 = BBa_K3482037= NSP4-truncated azurin-3XFLAG. | ||
| + | |||
| + | We can observe the presence in the immunoblotting of the flag protein in all cell lysate extract. In addition, we can see that both of the truncated versions of azurin which were originally not secreted (Figure 2, samples 3 and 4) are present in the supernatant, if necessary with a secretion tag concatenated. This leads us to conclude that our azurin is indeed expressed and secreted. | ||
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Revision as of 20:16, 25 October 2020
azurin with pelB-5D and 3X FLAG tag
Truncated azurin fused with a 3XFLAG tag and a pelB-D5 secretion signal peptide for protein expression and purification
Usage and Biology
Azurin is a blue copper-binding redox protein originally found in the periplasmic membrane of Pseudomonas aeruginosa. It has recently been discovered to have an l anticancer effect by targeting the well-known p53 apoptosis pathway and by preferentially entering cancerous cells.
We used this part to test if azurin was produced in our bacteria.
Characterization
To verify the correct expression of the azurin that we successfully cloned into our sponge plasmid and purified, we concatenated a widely used 3XFLAG tag at the C-terminus of our azurin gene (BBa_3482040). This allowed us to perform a Western Blot, which allowed us to confirm the presence or absence of our expressed azurin. In addition, we modified the existing part BBa_K2500001 (truncated azurin uploaded by the ETH Zürich team of 2017) with either the secretion tag pelB or NSP4[4] and investigated its secretion capability. E.coli Nissle 1917, which as been transformed with a modified sponge plasmid (usable in combination with a repressilator plasmid in the future) which contains our target genes constitutively expressed under a pTET promoter (BBa_K3482040, BBa_K3482041, BBa_K3482038, and BBa_K3482037). We then performed a western blot with overnight cultures set to OD600 of 2.0 of culture supernatant and lysate (pellet) were analyzed
Western blot analysis of flagged azurin from 4 different parts under 2 conditions: supernatant or cell lysate as “pellet”. Size range is shown around 15 kDa. Analysis performed by the wet lab team. Immunoblotting after SDS-PAGE migration, membrane transfer, and analysis performed with 3XFLAG antibody. Samples are as follow: 1 = BBa_K3482040 = azurin-3XFLAG; 2 = BBa_K3482041 = truncated azurin-3XFLAG; 3 = BBa_K3482038 = pelB-5D-truncated azurin-3XFLAG; 4 = BBa_K3482037= NSP4-truncated azurin-3XFLAG.
We can observe the presence in the immunoblotting of the flag protein in all cell lysate extract. In addition, we can see that both of the truncated versions of azurin which were originally not secreted (Figure 2, samples 3 and 4) are present in the supernatant, if necessary with a secretion tag concatenated. This leads us to conclude that our azurin is indeed expressed and secreted.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 54
- 1000COMPATIBLE WITH RFC[1000]