Difference between revisions of "Part:pSB1K04"
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===iGEM TypeIIS Vectors=== | ===iGEM TypeIIS Vectors=== | ||
− | {{TypeIIS/Plasmids}} | + | ====pOdd Loop Vectors (for Level 1)==== |
+ | {{CSS/DNA_Table}} | ||
+ | {{TypeIIS/Plasmids/Level1}} | ||
Revision as of 19:47, 15 June 2020
pOdd4 Loop Vector based on pSB1K3
pOdd4 Loop Vector based on pSB1K3
iGEM TypeIIS Vectors
pOdd Loop Vectors (for Level 1)
Assembling into Level 1 Plasmds
pSB1K01-pSB1K04 series of plasmids are based on the pOdd set of Loop Vectors and are built upon the pSB1K3 plasmid backbone.
Note:
- Since pSB1K3 is a high-copy plasmid backbone, these vectors should not be used for Level 3 assemblies.
- Currently, Registry samples of these plasmid backbones have not been fully sequenced. Only their prefix and suffix along with their insert BBa_J04454 have been verified.
Simplified diagram of BBa_J04454 and pSB1K0# with BsaI cut site.
When four Level 0 parts are assembled into the plasmid backbone (paired with BBa_J04454) in a one-pot assembly with BsaI...
the resulting transcriptional unit (TU) will be flanked by SapI restriction sites and the specified 3 bp Fusion Sites (NNN).
Level 1 Plasmid Set
Level 1 transcriptional units in this set of plasmid backbones will be flanked by SapI recognition sites and specified 3bp fusion sites, enabling further assembly of up to 4 transcriptional units as a Level 2 Assembly.
Registry Name | Loop Name | Fusion Site 5' | TU | Fusion Site 3' |
---|---|---|---|---|
pSB1K01 | pOdd1 | ATG | TU 1 | GCA |
pSB1K02 | pOdd2 | GCA | TU 2 | TAC |
pSB1K03 | pOdd3 | TAC | TU 3 | CAG |
pSB1K04 | pOdd4 | CAG | TU 4 | GGT |
Level 1 -> Level 2 Assembly
Up to 4 Level 1 transcriptional units can be assembled into a Level 2 multi-transcriptional unit. By planning your assemb
Simplified diagram of pSB1K0# set with assembled transcriptional units (TUs).
The iGEM Type IIS assembly standard is based on MoClo and Loop
- A Modular Cloning System for Standardized Assembly of Multigene Constructs
- Loop assembly: a simple and open system for recursive fabrication of DNA circuits
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal EcoRI site found at 2179
Illegal PstI site found at 12 - 12INCOMPATIBLE WITH RFC[12]Illegal EcoRI site found at 2179
Illegal PstI site found at 12 - 21INCOMPATIBLE WITH RFC[21]Illegal EcoRI site found at 2179
Illegal XhoI site found at 1029
Illegal XhoI site found at 2055 - 23INCOMPATIBLE WITH RFC[23]Illegal EcoRI site found at 2179
Illegal PstI site found at 12 - 25INCOMPATIBLE WITH RFC[25]Illegal EcoRI site found at 2179
Illegal PstI site found at 12 - 1000INCOMPATIBLE WITH RFC[1000]Illegal SapI site found at 2185
Illegal SapI.rc site found at 5