Difference between revisions of "Part:BBa K3002010"
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The SP20 HA tag leads to glycosylation and enhance the secretion of the enzymes MUT-PETase and MHETase significantly. It was crucial to secrete the MUT-PETase. The glycosylation worked very well but might influence the activity of the proteins. | The SP20 HA tag leads to glycosylation and enhance the secretion of the enzymes MUT-PETase and MHETase significantly. It was crucial to secrete the MUT-PETase. The glycosylation worked very well but might influence the activity of the proteins. | ||
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<img src="https://2019.igem.org/wiki/images/9/90/T--TU_Kaiserslautern--resultsFigure7.svg"/> | <img src="https://2019.igem.org/wiki/images/9/90/T--TU_Kaiserslautern--resultsFigure7.svg"/> | ||
<p class="caption"><span class="phat">Effect of the SP20 module on the secretion efficiency of MHETase. | <p class="caption"><span class="phat">Effect of the SP20 module on the secretion efficiency of MHETase. | ||
− | </span><span class="accent">(a)</span> Level 2 MoClo constructs harboring the aadA selection marker, and the coding sequences for MUT-PETase and MHETase equipped with the secretion signals introduced in Figure 6 and a C-terminal SP20 tag for enhancing glycosylation. See Figure 1 for the description of other parts. <span class="accent">(b)</span> UVM4 transformants containing the constructs shown in <span class="accent">(a)</span> were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Transformants C12 | + | </span><span class="accent">(a)</span> Level 2 MoClo constructs harboring the aadA selection marker, and the coding sequences for MUT-PETase and MHETase equipped with the secretion signals (<a href="https://parts.igem.org/Part:BBa_K3002212">BBa_K3002212</a>, <a href="https://parts.igem.org/Part:BBa_K3002213">BBa_K3002213</a>, <a href="https://parts.igem.org/Part:BBa_K3002214">BBa_K3002214</a>) introduced in Figure 6 and a C-terminal SP20 tag for enhancing glycosylation. See <a href="https://2019.igem.org/Team:TU_Kaiserslautern/Results">Figure 1</a> for the description of other parts. <span class="accent">(b)</span> UVM4 transformants containing the constructs shown in <span class="accent">(a)</span> were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Transformants C12 (<a href="https://parts.igem.org/Part:BBa_K3002202">BBa_K3002202</a>) and A27 (<a href="https://parts.igem.org/Part:BBa_K3002200">BBa_K3002200</a>) introduced in Figures 4 and 5, respectively, served as positive controls. The black arrow points to MHETase, the white arrow to MUT-PETase. |
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<img src="https://2019.igem.org/wiki/images/5/58/T--TU_Kaiserslautern--resultsFigure9.svg"/> | <img src="https://2019.igem.org/wiki/images/5/58/T--TU_Kaiserslautern--resultsFigure9.svg"/> | ||
<p class="caption"><span class="phat">Identification of MHETase and MUT-PETase by LC-MS/MS. | <p class="caption"><span class="phat">Identification of MHETase and MUT-PETase by LC-MS/MS. | ||
− | </span><span class="accent">(a)</span> Transformants generated with construct L2N <span class="accent">(d)</span> were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Protein bands corresponding to those detected with the anti-HA antibody in a gel run in parallel and stained with Coomassie brilliant blue were excised, in-gel digested with trypsin and analyzed by LC-MS/MS. Peptides identified by LC-MS/MS for MHETase (green) and MUT-PETase (purple) are indicated. <span class="accent">(b, c)</span> Sequences of MHETase and MUT-PETase with the peptides detected by LC-MS/MS are highlighted in green and purple, respectively. | + | </span><span class="accent">(a)</span> Transformants generated with construct L2N (<a href="https://parts.igem.org/Part:BBa_K3002213">BBa_K3002213</a>) <span class="accent">(d)</span> were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Protein bands corresponding to those detected with the anti-HA antibody in a gel run in parallel and stained with Coomassie brilliant blue were excised, in-gel digested with trypsin and analyzed by LC-MS/MS. Peptides identified by LC-MS/MS for MHETase (green) and MUT-PETase (purple) are indicated. <span class="accent">(b, c)</span> Sequences of MHETase and MUT-PETase with the peptides detected by LC-MS/MS are highlighted in green and purple, respectively. |
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<img src="https://2019.igem.org/wiki/images/2/24/T--TU_Kaiserslautern--resultsFigure10.svg"/> | <img src="https://2019.igem.org/wiki/images/2/24/T--TU_Kaiserslautern--resultsFigure10.svg"/> | ||
<p class="caption"><span class="phat">Verification of secretion of MHETase and MUT-PETase into the medium. | <p class="caption"><span class="phat">Verification of secretion of MHETase and MUT-PETase into the medium. | ||
− | </span>Transformants generated with constructs M, N, and O (Figure 8) were grown in TAP medium for seven days. Cells were centrifuged and the supernatant (s) lyophilized and resuspended in 2xSDS buffer. Cell pellets (p) were also resuspended in SDS-buffer. Both fractions were analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. The black arrow points to MHETase, the white arrow to MUT-PETase. | + | </span>Transformants generated with constructs M, N, and O (<a href="https://parts.igem.org/Part:BBa_K3002212">BBa_K3002212</a>, <a href="https://parts.igem.org/Part:BBa_K3002213">BBa_K3002213</a>, <a href="https://parts.igem.org/Part:BBa_K3002214">BBa_K3002214</a>)(Figure 8) were grown in TAP medium for seven days. Cells were centrifuged and the supernatant (s) lyophilized and resuspended in 2xSDS buffer. Cell pellets (p) were also resuspended in SDS-buffer. Both fractions were analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. The black arrow points to MHETase, the white arrow to MUT-PETase. |
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<img src="https://2019.igem.org/wiki/images/e/ea/T--TU_Kaiserslautern--resultsFigure11.svg"/> | <img src="https://2019.igem.org/wiki/images/e/ea/T--TU_Kaiserslautern--resultsFigure11.svg"/> | ||
<p class="caption"><span class="phat">Quantification of secreted MHETase and MUT-PETase. | <p class="caption"><span class="phat">Quantification of secreted MHETase and MUT-PETase. | ||
− | </span><span class="accent">(a)</span> Transformants generated with constructs C, J, M, N, and O (Figure 8) were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Whole-cell extracts of strain B1-TIG-HA for which concentrations of the HA-tagged TIG protein are known are loaded next to the lyophilized supernatants. The black arrow points to MHETase, the white arrows to MUT-PETase. The supernatant of a culture with the UVM4 strain were loaded as negative control. <span class="accent">(b)</span> Maximum cell densities, doubling times, daily growth rates, yields of MHETase and PETase and daily productivity of both combined were calculated for the transformant lines indicated. | + | </span><span class="accent">(a)</span> Transformants generated with constructs C, J, M, N, and O (<a href="https://parts.igem.org/Part:BBa_K3002202">BBa_K3002202</a>, <a href="https://parts.igem.org/Part:BBa_K3002208">BBa_K3002208</a>, <a href="https://parts.igem.org/Part:BBa_K3002212">BBa_K3002212</a>, <a href="https://parts.igem.org/Part:BBa_K3002213">BBa_K3002213</a>, <a href="https://parts.igem.org/Part:BBa_K3002214">BBa_K3002214</a>)(Figure 8) were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Whole-cell extracts of strain B1-TIG-HA for which concentrations of the HA-tagged TIG protein are known are loaded next to the lyophilized supernatants. The black arrow points to MHETase, the white arrows to MUT-PETase. The supernatant of a culture with the UVM4 strain were loaded as negative control. <span class="accent">(b)</span> Maximum cell densities, doubling times, daily growth rates, yields of MHETase and PETase and daily productivity of both combined were calculated for the transformant lines indicated. |
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<img src="https://2019.igem.org/wiki/images/7/7d/T--TU_Kaiserslautern--resultsFigure12.svg"/> | <img src="https://2019.igem.org/wiki/images/7/7d/T--TU_Kaiserslautern--resultsFigure12.svg"/> | ||
<p class="caption"><span class="phat">Analysis of secreted enzymes of transformant N6 transformed with construct AI. | <p class="caption"><span class="phat">Analysis of secreted enzymes of transformant N6 transformed with construct AI. | ||
− | </span><span class="accent">(b)</span> Clones generated with transformant N6 (Figure 8) and construct L2AI <span class="accent">(a)</span> were grown in TAP medium for four days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Transformant C12 introduced in Figure 5, served as positive controls. The black arrow points to MHETase, the white arrow to MUT-PETase. | + | </span><span class="accent">(b)</span> Clones generated with transformant N6 (Figure 8) and construct L2AI (<a href="https://parts.igem.org/Part:BBa_K3002234">BBa_K3002234</a>) <span class="accent">(a)</span> were grown in TAP medium for four days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Transformant C12 introduced in Figure 5, served as positive controls. The black arrow points to MHETase, the white arrow to MUT-PETase. |
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<img src="https://2019.igem.org/wiki/images/9/90/T--TU_Kaiserslautern--resultsFigure13.svg"/> | <img src="https://2019.igem.org/wiki/images/9/90/T--TU_Kaiserslautern--resultsFigure13.svg"/> | ||
<p class="caption"><span class="phat">Analysis of secreted MUT-PETase and MHETase with secretion signals cCA, ARS and GLE in the CC-4533 strain background. | <p class="caption"><span class="phat">Analysis of secreted MUT-PETase and MHETase with secretion signals cCA, ARS and GLE in the CC-4533 strain background. | ||
− | </span>Transformants generated in the CC-4533 strain background with constructs M and N (Figure 8) were grown in TAP medium for four days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. The supernatant of a culture with the CC-4533 strain were loaded as negative control. The black arrow points to MHETase, the white arrow to MUT-PETase. | + | </span>Transformants generated in the CC-4533 strain background with constructs M (<a href="https://parts.igem.org/Part:BBa_K3002212">BBa_K3002212</a>) and N (<a href="https://parts.igem.org/Part:BBa_K3002213">BBa_K3002213</a>) (Figure 8) were grown in TAP medium for four days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. The supernatant of a culture with the CC-4533 strain were loaded as negative control. The black arrow points to MHETase, the white arrow to MUT-PETase. |
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<img src="https://2019.igem.org/wiki/images/8/8b/T--TU_Kaiserslautern--resFig14.png"/> | <img src="https://2019.igem.org/wiki/images/8/8b/T--TU_Kaiserslautern--resFig14.png"/> | ||
<p class="caption"><span class="phat">Growth and secretion of MUT-PETase and MHETase in UVM4 transformant N6 under different conditions. | <p class="caption"><span class="phat">Growth and secretion of MUT-PETase and MHETase in UVM4 transformant N6 under different conditions. | ||
− | </span><span class="accent">(a)</span> Growth curves of the UVM4 recipient strain and UVM4 transformant N6 (Figure 8) at 25°C, 80 µE and 33°C, 170 µE. UVM4 and transformant N6 were inoculated in 50 mL with 2*10<sup>5</sup> cells/mL. Growth was measured by counting cells for 8 days. Error bars represent the standard error of three biological replicates. <span class="accent">(b)</span> Time course of MHETase and MUT-PETase secretion into TAP medium. 2 mL of each sample was lyophilized, desalted and resuspended in 2xSDS loading buffer. 10 µl of each sample were separated via SDS-PAGE and analyzed by immunoblotting with an anti-HA antibody. An antibody against chloroplast ribosomal 50S protein L1 (RPL1) was used to detect contaminations from cellular proteins. The black arrow points to MHETase, the white arrow to MUT-PETase and the grey arrow to RPL1. <span class="accent">(c-f)</span> Bright-field images of strains UVM4 and N6 grown grown for 3 days at 25°C and 89 µE or at 33°C and 170 µE. | + | </span><span class="accent">(a)</span> Growth curves of the UVM4 recipient strain and UVM4 transformant N6 (<a href="https://parts.igem.org/Part:BBa_K3002213">BBa_K3002213</a>) (Figure 8) at 25°C, 80 µE and 33°C, 170 µE. UVM4 and transformant N6 were inoculated in 50 mL with 2*10<sup>5</sup> cells/mL. Growth was measured by counting cells for 8 days. Error bars represent the standard error of three biological replicates. <span class="accent">(b)</span> Time course of MHETase and MUT-PETase secretion into TAP medium. 2 mL of each sample was lyophilized, desalted and resuspended in 2xSDS loading buffer. 10 µl of each sample were separated via SDS-PAGE and analyzed by immunoblotting with an anti-HA antibody. An antibody against chloroplast ribosomal 50S protein L1 (RPL1) was used to detect contaminations from cellular proteins. The black arrow points to MHETase, the white arrow to MUT-PETase and the grey arrow to RPL1. <span class="accent">(c-f)</span> Bright-field images of strains UVM4 and N6 grown grown for 3 days at 25°C and 89 µE or at 33°C and 170 µE. |
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Revision as of 22:41, 13 December 2019
Sp20 HA tag for Chlamydomonas reinhardtii (Phytobrick)
The SP20 HA tag leads to glycosylation and enhance the secretion of the enzymes MUT-PETase and MHETase significantly. It was crucial to secrete the MUT-PETase. The glycosylation worked very well but might influence the activity of the proteins.
The Kaiser Collection
We are proud to present our very own MoClo part collection for C. reinhardtii - the Kaiser collection.
These 20 Parts are specifically designed and codon optimized for Chlamydomonas. Among them are regulatory elements, antibiotic resistances, resistance cassettes, secretion signals and tags. These parts were tested and optimized thoroughly and we can guarantee that they work 100%. With these, expression and secretion in Chlamy will be a success. Because this is a MoClo collection, the parts are highly standardized for worldwide application. The combination with other part collections works fast and easy. While in MoClo, nomenclature is a bit different from the iGEM BioBricks, it is quickly explained:
Level 0 parts are equivalent to basic parts, e.g. Promoters, coding sequences, etc.
Level 1 parts are combinations of basic parts and usually form functional transcription units.
Level 2 parts are combinations of Level 1 parts, in case you want to transfer multiple transcription units at once. For example, you can pair your gene of interest with a selection marker.
The great thing about the Kaiser Collection and MoClo is that the ligation works in a one pot, one step reaction, as the Type IIs restriction enzymes cut out their own recognition sites. This way, multiple constructs can be combined linearly in a fixed order to create complex structures. This is ensured by the standardized overlaps that assign the parts one of 10 positions in the final constructs. After trying MoClo once, you won’t go back to traditional ligation. It is incredibly easy and reliable. For this reason, we believe that our Kaiser Collection will strike a significant chord, as the future lies in standardized, easy to use methods such as MoClo. Visit our part collection site to get an overview over all parts of the Kaiser Collection
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]