Difference between revisions of "Part:BBa K2992013"

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===Characterisation===
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This basic part was used in p<i>botR</i> to prevent run through expression from the pyrE operon through to the <i>botR</i> gene, therefore preventing any basal levels of BotR expression. See our [https://2019.igem.org/Team:Nottingham/Results results page] for more information.
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https://2019.igem.org/wiki/images/5/5e/T--Nottingham--Basic4.png
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https://2019.igem.org/wiki/images/6/6b/T--Nottingham--Basic3.png
  
 
===References===
 
===References===

Revision as of 19:59, 21 October 2019

Usage

Tfad is a terminator sequence derived from the fad gene of C. tetani, encoding FAD-binding oxidreducatse. These enzymes catalyse the conversion of dihydroxyacetone phosphate to glycerol-3-phosphate in a reversible reaction. In our project we use this strong terminator to prevent polar transcription from the pyrE operon of C. sporogenes following chromosomal knock-in of botR (BBa_K2992002) at this locus. The secondary structure for Tfad was predicted using the Mfold web tool (Zuker, 2003).

Terminator.png

Tfad from C. tetani

  • Transcriptional terminator sequence from the FAD-dependent oxidoreductase, fad, from Clostridium tetani

Secondary Structure

Mfold-K2992013-1.png

Characterisation

This basic part was used in pbotR to prevent run through expression from the pyrE operon through to the botR gene, therefore preventing any basal levels of BotR expression. See our results page for more information.
T--Nottingham--Basic4.png
T--Nottingham--Basic3.png

References

Zuker, M. (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research, 31(13), pp.3406-3415.


Measurement

  • [http://openwetware.org/wiki/Cconboy:Terminator_Characterization/Results How these parts were measured]