Difference between revisions of "Part:BBa J364000"

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The results showed that both precipitation and supernatant contained relatively strong GFP after centrifugation. Moreover, the distribution of GFP in ''E.coli'' DH5α with <html><a href='https://parts.igem.org/Part:BBa_K3034007'>BBa_K3034007</a></html> was not significantly different from that in ''E.coli'' DH5α with BBa_J364000. But, the content of GFP in the broken ''E.coli'' DH5α with <html><a href='https://parts.igem.org/Part:BBa_K3034007'>BBa_K3034007</a></html> was higher than that in the ''E.coli'' DH5α with BBa_J364000.
 
The results showed that both precipitation and supernatant contained relatively strong GFP after centrifugation. Moreover, the distribution of GFP in ''E.coli'' DH5α with <html><a href='https://parts.igem.org/Part:BBa_K3034007'>BBa_K3034007</a></html> was not significantly different from that in ''E.coli'' DH5α with BBa_J364000. But, the content of GFP in the broken ''E.coli'' DH5α with <html><a href='https://parts.igem.org/Part:BBa_K3034007'>BBa_K3034007</a></html> was higher than that in the ''E.coli'' DH5α with BBa_J364000.
 +
 +
Since the ''E.coli'' DH5α carrying <html><a href='https://parts.igem.org/Part:BBa_K3034007'>BBa_K3034007</a></html> expressed GFP, this indirectly indicated that INPNC was successfully expressed. However, the content of GFP in the ''E.coli'' DH5α precipitate (cell membrane) carrying <html><a href='https://parts.igem.org/Part:BBa_K3034007'>BBa_K3034007</a></html> was not significantly higher than that in the control group (with BBa_J364000). We hypothesized that INPNC was expressed but not highly active.
 +
 +
 +
====Microscopic observation====
 +
Next, ''E.coli'' DH5α with BBa_J364000 (GFP) was observed to be rod-shaped and fluorescently filled with ''E.coli'' DH5α under a 40-fold microscope. The fluorescence of ''E.coli'' DH5α with <html><a href='https://parts.igem.org/Part:BBa_K3034007'>BBa_K3034007</a></html> (INPNC+GFP) was observed to be dotted and dispersed on the surface of ''E.coli'' DH5α. The results proved that INPNC was successfully expressed and functioned (Fig.2).
 +
 +
[[File:T_UESTC_China_INPNC.png|700px|thumb|center|'''Fig.2.''' The fluorescence microscopy of ''E.coli'' DH5α carrying BBa_J364000(a) and ''E.coli'' DH5α carrying <html><a href='https://parts.igem.org/Part:BBa_K3034007'>BBa_K3034007</a></html> (b、c). ]]
 +
 +
In addition, we also noticed that ''E.coli'' DH5α carrying <html><a href='https://parts.igem.org/Part:BBa_K3034007'>BBa_K3034007</a></html> (INPNC+GFP) had fluorescence aggregation on one side of the ''E.coli'' DH5α surface. The result is consistant with fact that we found in the literature[2] that the INPNC forms aggregates in the cell membrane.
 +
 +
 +
====Conclusion====
 +
 +
 +
 +
====Improvement and application====
 +
By fusing GFP with INPNC, we can implement the following improvements:
 +
(1) We upgraded this part into a surface display and report system, which can anchor GFP to the surface of ''E.coli'' and realize the function enhancement of the original part.
 +
(2) While GFP is used to report the expression of other enzymes, the system can also anchor other enzymes together with GFP to the bacterial surface to realize the surface display of certain enzymes and enhance the enzyme activity.
 +
 +
 +
====References====
 +
[1] Yang, X., Sun, S., Wang, H., & Hang, H. (2013). Comparison of autotransporter and ice nucleation protein as carrier proteins for antibody display on the cell surface of Escherichia coli. Prog Biochem Biophys, 40, 1209-19.
 +
[2] Lee, S. Y., Choi, J. H., & Xu, Z. (2003). Microbial cell-surface display. Trends in biotechnology, 21(1), 45-52.

Revision as of 14:57, 19 October 2019


Test Device 1 for the iGEM InterLab Study

This is a GFP expressing constitutive device for the 2017 iGEM InterLab study. It is called Test Device 1 for the study for easy reference.

This device is stored in pSB1C3 for the InterLab and is fully BioBrick compatible.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 705


Team NAWI_Graz 2019: GFP dynamics of transformed Escherichia coli strains in LB broth

Three strains expression on GFP and its control
Background

In Team NAWI_Graz 2019 characterization, we found that in normal growth/incubation condition (37 oC, LB agar) BBa_J364000-transformed Escherichia coli BL21 cells had the highest GFP expression in comparison to BL21 Star and Top 10 strains. In order to confirm that we have measured the GFP Flourescence of those three strains over 44 hours period.

Experimental Design

We used three different strains of transformed E. coli (Top10,BL21 and BL21 Star) for this study. Transformed strains were incubated in 15 mL LB broth 37 oC overnight. Next day they were used to inoculate a 50 mL LB to OD600=0.1. The cultures were then incubated at 37 oC, 140 rpm and samples were taken every 4 hours for 2 days to determine the green fluorescence protein (GFP) fluorescence intensity at 510 nm.

Result and Findings
  • There are significant differences of GFP expression in different strains of E. coli (Top10, BL21, BL21 Star)
  • The broth became ligh green in color under natural light after around 14-18 hours of incubation time.


          Figure 1: GFL Flourescence and OD600 Measurements with GFP containing E.coli strains and non GFP containing E.coli strains (control))


Figure 2: ~14 hours old GFP-transformed E. coli strains (Left: Top10, Middle: BL21, Right: BL21 Star)


Improvement

We improved this reporter device into a surface presentation + reporting system (BBa_K3034007) by fusing GFP with INPNC so that the team could make reporter genes through GFP and anchor the target protein to the bacteria outer membrane for more applications.

Ice nucleation protein (INP) is a secretory outer membrane protein from Pseudomomas syringae P. flurorescens and several other Gram—negative bacteria[1]. INP can anchor one or more "passenger proteins" to the outer membrane of E.coli DH5α. The fixation of exogenous proteins on the cell surface through INPNC can not only greatly improve the efficiency of enzymatic reaction, but also avoid the degradation of exogenous proteins by intracellular enzymes of host cells.

Besides, we added a segment of linker between INPNC and GFP to ensure that two adjacent domains do not sterically interfere with one another.


Quantitative detection of fluorescence

We first cultured the bacteria overnight and made OD600 uniform. We ultrasonic broken, centrifuged and respectively resuspend precipitation to measure the distribution of GFP in E.coli DH5α carrying BBa_J364000 and E.coli DH5α carrying BBa_K3034007 (Fig.1).

Fig.1. The relative fluorescence intensity of E.coli DH5α carrying BBa_J364000 and E.coli DH5α carrying BBa_K3034007. The relative fluorescence intensity= Fluorescence of precipitation/ (Fluorescence of supernatant+ Fluorescence of precipitation)×100%.

The results showed that both precipitation and supernatant contained relatively strong GFP after centrifugation. Moreover, the distribution of GFP in E.coli DH5α with BBa_K3034007 was not significantly different from that in E.coli DH5α with BBa_J364000. But, the content of GFP in the broken E.coli DH5α with BBa_K3034007 was higher than that in the E.coli DH5α with BBa_J364000.

Since the E.coli DH5α carrying BBa_K3034007 expressed GFP, this indirectly indicated that INPNC was successfully expressed. However, the content of GFP in the E.coli DH5α precipitate (cell membrane) carrying BBa_K3034007 was not significantly higher than that in the control group (with BBa_J364000). We hypothesized that INPNC was expressed but not highly active.


Microscopic observation

Next, E.coli DH5α with BBa_J364000 (GFP) was observed to be rod-shaped and fluorescently filled with E.coli DH5α under a 40-fold microscope. The fluorescence of E.coli DH5α with BBa_K3034007 (INPNC+GFP) was observed to be dotted and dispersed on the surface of E.coli DH5α. The results proved that INPNC was successfully expressed and functioned (Fig.2).

Fig.2. The fluorescence microscopy of E.coli DH5α carrying BBa_J364000(a) and E.coli DH5α carrying BBa_K3034007 (b、c).

In addition, we also noticed that E.coli DH5α carrying BBa_K3034007 (INPNC+GFP) had fluorescence aggregation on one side of the E.coli DH5α surface. The result is consistant with fact that we found in the literature[2] that the INPNC forms aggregates in the cell membrane.


Conclusion

Improvement and application

By fusing GFP with INPNC, we can implement the following improvements: (1) We upgraded this part into a surface display and report system, which can anchor GFP to the surface of E.coli and realize the function enhancement of the original part. (2) While GFP is used to report the expression of other enzymes, the system can also anchor other enzymes together with GFP to the bacterial surface to realize the surface display of certain enzymes and enhance the enzyme activity.


References

[1] Yang, X., Sun, S., Wang, H., & Hang, H. (2013). Comparison of autotransporter and ice nucleation protein as carrier proteins for antibody display on the cell surface of Escherichia coli. Prog Biochem Biophys, 40, 1209-19. [2] Lee, S. Y., Choi, J. H., & Xu, Z. (2003). Microbial cell-surface display. Trends in biotechnology, 21(1), 45-52.