Difference between revisions of "Part:BBa K2983010"
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===Usage and Biology===
 
===Usage and Biology===
  
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The Loop Type IIS cloning sites (triangles in figure 1) are a combination of BsaI and SapI restriction sites each with different cutting sites that generate well defined overhangs (circles in Figure 1).The sequence of the loop Alpha is as fellow :GCTCTTCAATGAGGAGTGAGACC
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The Loop Type IIS cloning sites (triangles in figure 1) are a combination of BsaI and SapI restriction sites each with different cutting sites that generate well defined overhangs (circles in Figure 1).The sequence of the loop Alpha is as fellow : GCTCTTCAATGAGGAGTGAGACC
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[[File:T--Evry Paris-Saclay--Loop Alpha-A.png|300px|thumb|left| Figure 1:Loop alpha-A structure]]
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Blue triangle: SapI fixation site (GCTCTTC)
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Red triangle : BsaI fixation site (GAGACC)
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Blue circle : overhang formed by SapI after cutting (ATG)
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Red circle: overhang formed by BasI  after cutting  (GGAG)
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[[File:T--Evry Paris-Saclay--Loop Alpha-A.png|200px|thumb|left| Figure 1:Conversion of linoleic acid to punicic acid  (both incorporated into phosphatidylcholine)]]
 
  
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Blue triangle: SapI fixation site
 
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Red triangle : BsaI fixation site
 
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Blue circle : SapI cutting site
 
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Red circle: BasI cutting site
 
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Revision as of 13:07, 19 October 2019


Loop Alpha-A

This part is a Loop Type IIS Golden gate adapter that contains a BsaI and a SapI restriction sites.

Usage and Biology

The Loop Type IIS cloning sites (triangles in figure 1) are a combination of BsaI and SapI restriction sites each with different cutting sites that generate well defined overhangs (circles in Figure 1).The sequence of the loop Alpha is as fellow : GCTCTTCAATGAGGAGTGAGACC

Figure 1:Loop alpha-A structure


Blue triangle: SapI fixation site (GCTCTTC)

Red triangle : BsaI fixation site (GAGACC)

Blue circle : overhang formed by SapI after cutting (ATG)

Red circle: overhang formed by BasI after cutting (GGAG)



Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 18
    Illegal SapI site found at 1