Difference between revisions of "Part:BBa K2904030"
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After constructing modular kinetic riboswitches, we then want to demonstrate that our guideline can also apply to the thermodynamic riboswitch. So we designed a modular Four U riboswitch containing the original Four U riboswitch, Stabilizer and Tuner A. Using docking matrix, we selected the first 132bp of RFP as Stabilizer because RFP can express under the control of Four U. | After constructing modular kinetic riboswitches, we then want to demonstrate that our guideline can also apply to the thermodynamic riboswitch. So we designed a modular Four U riboswitch containing the original Four U riboswitch, Stabilizer and Tuner A. Using docking matrix, we selected the first 132bp of RFP as Stabilizer because RFP can express under the control of Four U. | ||
==<strong>Result</strong>== | ==<strong>Result</strong>== | ||
| − | To validate this new thermodynamic switch, we engineered a device including the tetracycline promoter, the modular Four U riboswitch and sfGFP. | + | To validate this new thermodynamic switch, we engineered a device including the tetracycline promoter, the modular Four U riboswitch and sfGFP. After construction, the circuit was transformed into DH5α. Given that the temperature threshold of Four U is 37℃, we set the culture temperature to 28℃, 37℃ and 42℃ in liquid LB medium. |
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| + | ===The result of other team=== | ||
| + | Further verification the working effect of FourU element as temperature-controlled switch | ||
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| + | For further verifying the working effect of FourU element, we tested the fluorescence intensity of RFP protein to measure the expression level of the reporter protein regulated by FourU element as temperature-controlled switch. So we shake the bacteria containing plasmid with FourU element and the positive and negative control groups in the LB with chloramphenicol and set two culture temperature: 30°C and 37°C. After cultured for 24h, we test the fluorescent of RFP protein at excitation wavelength-584 nm and emission wavelength-607 nm. | ||
| + | And then, we extend the culture time to 30h and choose 3 time point (6h, 24h, 30h) to test fluorescence intensity of RFP protein expressed by each group, to test the level of leaked expression of RFP protein controlled by FourU element. | ||
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<!-- Add more about the biology of this part here | <!-- Add more about the biology of this part here | ||
Revision as of 13:00, 17 October 2019
Modular Four U riboswitch
Design
Background of 2019 OUC-China's project——RiboLego
Due to context-dependent performance and limited dynamic range, the widespread application of riboswitches is currently restricted. By replacing its original ORF with a new one, the structure of an aptamer domain can be subtly disrupted, resulting in a loss of ligand response. So riboswitch is still not be considered as a ‘plug and play' device. To tackle these problems, our project focuses on a standardized design principle to be used for modular and tunable riboswitch. The modular riboswitch we defined consists of the original riboswitch, Stabilizer and Tuner. Stabilizer can protect the structure of riboswitch from damage while Tuner can reduce the expression probability of fusion protein and make improvement of riboswitch function.
The construction of this part
After constructing modular kinetic riboswitches, we then want to demonstrate that our guideline can also apply to the thermodynamic riboswitch. So we designed a modular Four U riboswitch containing the original Four U riboswitch, Stabilizer and Tuner A. Using docking matrix, we selected the first 132bp of RFP as Stabilizer because RFP can express under the control of Four U.
Result
To validate this new thermodynamic switch, we engineered a device including the tetracycline promoter, the modular Four U riboswitch and sfGFP. After construction, the circuit was transformed into DH5α. Given that the temperature threshold of Four U is 37℃, we set the culture temperature to 28℃, 37℃ and 42℃ in liquid LB medium.
The result of other team
Further verification the working effect of FourU element as temperature-controlled switch
For further verifying the working effect of FourU element, we tested the fluorescence intensity of RFP protein to measure the expression level of the reporter protein regulated by FourU element as temperature-controlled switch. So we shake the bacteria containing plasmid with FourU element and the positive and negative control groups in the LB with chloramphenicol and set two culture temperature: 30°C and 37°C. After cultured for 24h, we test the fluorescent of RFP protein at excitation wavelength-584 nm and emission wavelength-607 nm. And then, we extend the culture time to 30h and choose 3 time point (6h, 24h, 30h) to test fluorescence intensity of RFP protein expressed by each group, to test the level of leaked expression of RFP protein controlled by FourU element.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]