Revision as of 07:58, 20 October 2019

Modified pLux

Quorum sensing activated promoter that responds natively to the Lux pathway (activated by LuxR + 3OC6HSL). This specific instance of this promoter has a mutation on nucleotide 18 of the consensus sequence, which reportedly diminishes genetic crosstalk with the Las system.

Usage and Biology

XHD-WS-Wuhan-A characterization

Aim of experiment

Based on K2771000 part, a genetic circuit LuxR-pLux-GFP was constructed to characterize the function of this modified pLux promoter and contributed to this part.

Methods

1. Construction of pLuxR-pLux-GFP We designed our genetic circuit based on the synthetic biology principle, which is shown in Fig1. The circuit was then constructed into plasmid backbone pSB1C3 by DNA synthesis. The pLuxR promoter was identified by PCR and enzyme digestion.

Fig1.Gene circuit of pLuxR-plux-GFP combinations

2. GFP expression of E.coli under the control of K2771000 induced by different concentration of AHL (3OC6HSL)

Constructed plasmid pSB1C3-pLuxR-pLux-GFP containing K2771000 part was transformed into E.coli DH5α strain. Single colony was selected to inoculate LB broth containing chloramphenicol and cultured overnight. Then overnight culture was inoculated in fresh LB broth containing chloramphenicol at 1:50 to expand the culture, and the experiment was started when OD600 reached 0.4-0.6. Different concentrations of 3OC6HSL solutions were added into the test tube. The final concentration of 3OC6HSL was 0, 0.01, 0.1, 1, 10, 100, 1,000, 10,000, 100,000nM respectively. Samples were taken every one hour. GFP fluorescence intensity (485 nm excitation/ 528 nm emission) and OD600 value were measured at the same time.

Results

We used the constructed plasmid as template and then took PCR to obtain the corresponding fragment pLux-GFP. As shown in Fig2, the size of the PCR product was as expected. The constructed plasmid was then double digested with Sph I/Pst I. the results indicate that enzyme digestion was as expected.

Fig2. Map of pLux + GFP fragment after PCR and plasmid pSB1C3-pLuxR-pLux-GFP double-digested with Sph I and Pst I in gel electrophoresis.

The standard fluorescence intensity(FL/OD600) was obtained by dividing the fluorescence intensity by OD600. As show in Fig.3, there are basically no difference in the first 6 hours of different 3OC6HSL concentrations. From 7hours, the fluorescence intensity was increased compared to the control group (0nM).

From Fig.3 we know that the fluorescence intensity is strongest at 8 hours. So 8h was chosen for further study.As shown in Fig.4, pLux promoter is very sensitive to 3OC6HSL and requires only 1nm to detect fluorescence signals. The threshold for pLux detection is low, while the background of the control is very high, indicating the leak of this promoter.

Fig.4 GFP expression of E.coli under the control of pLux (K2771000) in different concentrations 3OC6HSL.

Summary

The plasmid constructed based on K2771000 is sensitive to 3OC6HSL. The threshold of the pLux promoter is 1nM but the background is very high. Therefore promoters with high thresholds and low leakage need to be developed.

Reference:

Grant et al. Orthogonal intercellular signaling for programmed spatial behavior. Mol Syst Biol. (2016) 12: 849

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

@@ Line 11: / Line 11: @@
-===XHD-WS-Wuhan-A characterization===
+<h1>XHD-WS-Wuhan-A characterization</h1>
-We constructed a gene Gene circuit : LuxR-Plux-GFP to measure the function of promoter Plux under GFP protein. Based on our experiments, we have provided detailed data for part K2771000, thus making a valuable characterization for this part.
-Plux is a promoter which responds natively to the Lux pathway (activated by LuxR + 3OC6HSL). In order to test this promoter function. We constructed a gene Gene circuit : LuxR-Plux-GFP to measure the function of promoter Plux under GFP protein. Based on our experiments, we have provided detailed data for this part K2771000, thus making a valuable characterization for this part.
-===Experiment Design and Measurement Methods===
+<h2>Aim of experiment </h2>
+Based on K2771000 part, a genetic circuit LuxR-pLux-GFP was constructed to characterize the function of this modified pLux promoter and contributed to this part.
-We cloned LuxR, lux promoter and GFP into psB1C3 vector, and constructed ppSB1C3-LuxR-Plux-GFP plasmid. gene circuit as Fig1.:
+<h2>Methods</h2>
+. Construction of pLuxR-pLux-GFP
+We designed our genetic circuit based on the synthetic biology principle, which is shown in Fig1. The circuit was then constructed into plasmid backbone pSB1C3 by DNA synthesis. The pLuxR promoter was identified by PCR and enzyme digestion.
+Fig1.Gene circuit of pLuxR-plux-GFP combinations
+https://2019.igem.org/wiki/images/f/fd/T--XHD-WS-Wuhan-A--Cu1.jpeg
+. GFP expression of E.coli under the control of K2771000 induced by different concentration of AHL (3OC6HSL)
+Constructed plasmid pSB1C3-pLuxR-pLux-GFP containing K2771000 part was transformed into E.coli DH5α strain. Single colony was selected to inoculate LB broth containing chloramphenicol and cultured overnight. Then overnight culture was inoculated in fresh LB broth containing chloramphenicol at 1:50 to expand the culture, and the experiment was started when OD600 reached 0.4-0.6. Different concentrations of 3OC6HSL solutions were added into the test tube. The final concentration of 3OC6HSL was 0, 0.01, 0.1, 1, 10, 100, 1,000, 10,000, 100,000nM respectively. Samples were taken every one hour. GFP fluorescence intensity (485 nm excitation/ 528 nm emission) and OD600 value were measured at the same time.
+<h2> Results</h2>
+We used the constructed plasmid as template and then took PCR to obtain the corresponding fragment pLux-GFP. As shown in Fig2, the size of the PCR product was as expected. The constructed plasmid was then double digested with Sph I/Pst I. the results indicate that enzyme digestion was as expected.
+https://2019.igem.org/wiki/images/0/0d/T--XHD-WS-Wuhan-A--Cu2.jpeg
+Fig2. Map of pLux + GFP fragment after PCR and plasmid pSB1C3-pLuxR-pLux-GFP double-digested with Sph I and Pst I in gel electrophoresis.
+The standard fluorescence intensity(FL/OD600) was obtained by dividing the fluorescence intensity by OD600. As show in Fig.3, there are basically no difference in the first 6 hours of different 3OC6HSL concentrations. From 7hours, the fluorescence intensity was increased compared to the control group (0nM).
+https://2019.igem.org/wiki/images/d/d8/T--XHD-WS-Wuhan-A--Cu3.jpeg
+ From Fig.3 we know that the fluorescence intensity is strongest at 8 hours. So 8h was chosen for further study.As shown in Fig.4, pLux promoter is very sensitive to 3OC6HSL and requires only 1nm to detect fluorescence signals. The threshold for pLux detection is low, while the background of the control is very high, indicating the leak of this promoter.
+https://2019.igem.org/wiki/images/8/89/T--XHD-WS-Wuhan-A--Cu4.jpeg
+Fig.4 GFP expression of E.coli under the control of pLux (K2771000) in different concentrations 3OC6HSL.
+<h2> Summary</h2>
+The plasmid constructed based on K2771000 is sensitive to 3OC6HSL. The threshold of the pLux promoter is 1nM but the background is very high. Therefore promoters with high thresholds and low leakage need to be developed.
+<h2> Reference: </h2>
+Grant et al. Orthogonal intercellular signaling for programmed spatial behavior. Mol Syst Biol. (2016) 12: 849

Difference between revisions of "Part:BBa K2771000"