Difference between revisions of "Part:BBa K3128019:Design"
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Ompx is from <i> Escherichia coli</i> <br> | Ompx is from <i> Escherichia coli</i> <br> | ||
<i> pUT18 </i> plasmid from Euromedex BACTH kit was used.<br> | <i> pUT18 </i> plasmid from Euromedex BACTH kit was used.<br> | ||
| − | + | COMP gene and GGS linker were synthesized by IDT because they were unavailable on iGEM plates. | |
===References=== | ===References=== | ||
[https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=3&ved=2ahUKEwiw4qGr_ozlAhULA2MBHZNsBdUQFjACegQIBRAC&url=http%3A%2F%2Fstatic.bioport.cn%2Fdata%2Fupload%2Fproduct%2Fspecification%2F396%2F1342594983673_396560.pdf&usg=AOvVaw2TFscbzRiSzNjAvyMsZDHY EUROMEDEX BACTH] | [https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=3&ved=2ahUKEwiw4qGr_ozlAhULA2MBHZNsBdUQFjACegQIBRAC&url=http%3A%2F%2Fstatic.bioport.cn%2Fdata%2Fupload%2Fproduct%2Fspecification%2F396%2F1342594983673_396560.pdf&usg=AOvVaw2TFscbzRiSzNjAvyMsZDHY EUROMEDEX BACTH] | ||
Revision as of 17:29, 16 October 2019
COMP fused with T18 subpart of Bordetella Pertussis AC under constitutive promoter
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 7
Illegal NheI site found at 30 - 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 1300
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 841
Illegal NgoMIV site found at 1251
Illegal AgeI site found at 1057 - 1000COMPATIBLE WITH RFC[1000]
Design Notes
This biobrick has a TAG codon (Y121F' mutation) inside OmpX (amber TAG) sequene which can be used to introduce any Non Natural Amino acid outside the cell (more informations).
Euromedex BACTH kit contains the pUT18 plasmid with a MCS cassette followed by the T18 subpart of the Bordetella pertussis adenylate cyclase. It allows the cloning of the protein of interest in fusion with the T18 subpart. To respect RFC rules, the plasmid has been amplificated by PCR using primers that bind from either site of the MCS cassette to eliminate it. Those primers contain also restriction sites enabling the cloning of the protein in the system. The plasmid was digested by the corresponding enzymes and the protein gene was inserted.
Source
T18 is from bordetella pertussis
Ompx is from Escherichia coli
pUT18 plasmid from Euromedex BACTH kit was used.
COMP gene and GGS linker were synthesized by IDT because they were unavailable on iGEM plates.