Difference between revisions of "Part:BBa K3076300"
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==Usage and Biology== | ==Usage and Biology== | ||
| − | <p>This part contains homology sequences of 50 bp flanking a double terminator and a kanamycin resistance gene. The recombination site is at the 76 bp to 156 bp of the <i>CopA</i> gene. If the recombination succeeded, the kanamycin resistance gene will be inserted in between the <i>CopA</i> gene and disrupting the expression. Meanwhile, the kanamycin resistance gene can be used as a selection marker for successful recombination. | + | <p>This part contains homology sequences of 50 bp flanking a double terminator <html>(<a href="https://parts.igem.org/Part:BBa_B0015">BBa B0015</a>)</html>and a kanamycin resistance gene. The recombination site is at the 76 bp to 156 bp of the <i>CopA</i> gene. If the recombination succeeded, the kanamycin resistance gene will be inserted in between the <i>CopA</i> gene and disrupting the expression. Meanwhile, the kanamycin resistance gene can be used as a selection marker for successful recombination. The double terminator <html>(<a href="https://parts.igem.org/Part:BBa_B0015">BBa B0015</a>)</html> was added at the 5’ to ensure the termination of gene expression.</p> |
<p>To use this substrate, simply amplify this part by PCR. The PCR product is ready to be transformed and recombined. The <i>E. coli</i> strain used should express lambda red recombineering genes. On the other hand, the lambda red recombineering system can be introduced to the <i>E. coli</i> strain by transforming the <i>E. coli</i> with plasmids containing lambda red genes, such as pKD46.</p> | <p>To use this substrate, simply amplify this part by PCR. The PCR product is ready to be transformed and recombined. The <i>E. coli</i> strain used should express lambda red recombineering genes. On the other hand, the lambda red recombineering system can be introduced to the <i>E. coli</i> strain by transforming the <i>E. coli</i> with plasmids containing lambda red genes, such as pKD46.</p> | ||
Revision as of 12:13, 13 October 2019
dsDNA substrate with KanR gene for CopA knockout in E. coli by Lambda Red Recombineering
Description
This part is designed to use as double-stranded (ds) DNA substrate for knocking out CopA gene in E. coli by Lambda Red recombineering system.
Usage and Biology
This part contains homology sequences of 50 bp flanking a double terminator (BBa B0015)and a kanamycin resistance gene. The recombination site is at the 76 bp to 156 bp of the CopA gene. If the recombination succeeded, the kanamycin resistance gene will be inserted in between the CopA gene and disrupting the expression. Meanwhile, the kanamycin resistance gene can be used as a selection marker for successful recombination. The double terminator (BBa B0015) was added at the 5’ to ensure the termination of gene expression.
To use this substrate, simply amplify this part by PCR. The PCR product is ready to be transformed and recombined. The E. coli strain used should express lambda red recombineering genes. On the other hand, the lambda red recombineering system can be introduced to the E. coli strain by transforming the E. coli with plasmids containing lambda red genes, such as pKD46.
Due to the time constraint, we obtained the knockout strain from Keio knockout strain library directly to carry out the functional study. This dsDNA substrate has not been tested yet.
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]