Difference between revisions of "Part:BBa K3036002"

 
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<partinfo>BBa_K3036002 parameters</partinfo>
 
<partinfo>BBa_K3036002 parameters</partinfo>
 
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== Characterized by BNU-China 2019 ==
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<font size="4"><b>Biology and Usage</b></font>
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Derived from E. coli DH5alpha genome, the gene pta encodes phosphotransacetylase (PTA), of which the natural function is to reversibly convert acetyl-CoA into acetyl phosphate.
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The natural trait of PTA gives it a potential to produce acetic acid by lifting the level of its precursor acetyl phosphate. Together with acetokinase (ACK), which converts acetyl phosphate into acetic acid, PTA notably enhances yield of acetate through a two-step enzymatic reaction[1]. In our project, we take advantage of the pathway to overexpress acetate using an intestinal microbe inside human intestine, where acetate signals consumption of human white fat tissue.
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<div style="text-align:center">
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<table border="solid"  width="500px" height="150px" cellspacing="0" cellpadding="10" frame="solid" rules="solid" style="margin: auto">
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<tr align="center" valign="center" bgcolor="66CCFF" >
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<td colspan="2"><font size="3"><b>pta</b></font></td>
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</tr>
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<tr >
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<td><font size="2"><b>Function</b></font></td>
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<td>Phosphotransacetylase</td>
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</tr>
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<tr>
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<td><font size="2"><b>Use in</b></font></td>
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<td>Prokaryotes</td>
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</tr>
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<tr>
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<td><font size="2"><b>RFC standard</b></font></td>
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<td>RFC10 compatible</td>
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</tr>
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<tr>
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<td><font size="2"><b>Backbone</b></font></td>
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<td>pSB1C3</td>
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</tr>
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<tr>
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<td><font size="2"><b>Derived from</b></font></td>
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<td>Escherichia. coli DH5alpha </td>
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</tr>
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</table>
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</div>
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<font size="4"><b>Properties</b></font>
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The function of this part is validated in an acetate-overproducing system, where ACK and PTA are coexpressed in a polycistron system under control of a Plac promoter. Using Megazyme acetic acid assay kit, we verified that the yield of acetate is enhanced by a remarkable 9 fold, as is shown in Fig. 1.
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[[Image:2019 BNU-China BBa K3036001 fig1.png| border | center | 400px]]<br>
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<div class = "center">Figure 1 Acetate overproduction by coexpression of PTA and ACK</div>
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This overproduction can be further enhanced by coexpressing enzymes involved in acetyl-CoA-yielding processes, such as fatty acyl-CoA synthetase (FadD), key enzyme in beta-oxidation of higher fatty acids (Fig. 2).
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[[Image:2019 BNU-China BBa K3036001 fig2.png| border | center | 400px]]<br>
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<div class = "center">Fig. 2 Acetate overproduction by coexpression of ACK, PTA and FadD</div>
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<font size="4"><b>Experimental approach</b></font>
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1.Transfer the plasmid into E. coli competent cells. <br>
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2.Culture the strain in LB-ampicillin (50 ng/μL) at 37℃ for 5 hours, use a strain containing pUC19 as control group. <br>
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3.Induce both groups by addition of IPTG to a final concentration of 5 mM. <br>
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4.Keep culturing at 37℃ and take samples at 0 hr, 2 hr and 4 hr after induction. <br>
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5.Measure acetate content using Megazyme acetic acid assay kit. <br>
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6.Three replicas are tested in each group.
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<font size="4"><b>Reference</b></font>
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[1] Kakuda H, Shiroishi K, Hosono K, Ichihara S. Construction of Pta-Ack Pathway Deletion Mutants of Escherichia coli and Characteristic Growth Profiles of the Mutants in a Rich Medium. Biotech. Biochem., 58 (12), 2232~2235, 1994.

Revision as of 02:19, 12 October 2019


Phosphotransacetylase

This part encodes encodes phosphotransacetylase (PTA) of E. coli. The natural function of ACK is to convert acetyl-CoA into acetyl phosphate, giving it a potential to enhance acetate production by providing its precursor. Our team made use of this part, together with acetokinase (ACK), to overproduce acetic acid.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 583


Characterized by BNU-China 2019

Biology and Usage

Derived from E. coli DH5alpha genome, the gene pta encodes phosphotransacetylase (PTA), of which the natural function is to reversibly convert acetyl-CoA into acetyl phosphate.

The natural trait of PTA gives it a potential to produce acetic acid by lifting the level of its precursor acetyl phosphate. Together with acetokinase (ACK), which converts acetyl phosphate into acetic acid, PTA notably enhances yield of acetate through a two-step enzymatic reaction[1]. In our project, we take advantage of the pathway to overexpress acetate using an intestinal microbe inside human intestine, where acetate signals consumption of human white fat tissue.

pta
Function Phosphotransacetylase
Use in Prokaryotes
RFC standard RFC10 compatible
Backbone pSB1C3
Derived from Escherichia. coli DH5alpha

Properties

The function of this part is validated in an acetate-overproducing system, where ACK and PTA are coexpressed in a polycistron system under control of a Plac promoter. Using Megazyme acetic acid assay kit, we verified that the yield of acetate is enhanced by a remarkable 9 fold, as is shown in Fig. 1.

2019 BNU-China BBa K3036001 fig1.png

Figure 1 Acetate overproduction by coexpression of PTA and ACK

This overproduction can be further enhanced by coexpressing enzymes involved in acetyl-CoA-yielding processes, such as fatty acyl-CoA synthetase (FadD), key enzyme in beta-oxidation of higher fatty acids (Fig. 2).

2019 BNU-China BBa K3036001 fig2.png

Fig. 2 Acetate overproduction by coexpression of ACK, PTA and FadD

Experimental approach

1.Transfer the plasmid into E. coli competent cells.
2.Culture the strain in LB-ampicillin (50 ng/μL) at 37℃ for 5 hours, use a strain containing pUC19 as control group.
3.Induce both groups by addition of IPTG to a final concentration of 5 mM.
4.Keep culturing at 37℃ and take samples at 0 hr, 2 hr and 4 hr after induction.
5.Measure acetate content using Megazyme acetic acid assay kit.
6.Three replicas are tested in each group.

Reference

[1] Kakuda H, Shiroishi K, Hosono K, Ichihara S. Construction of Pta-Ack Pathway Deletion Mutants of Escherichia coli and Characteristic Growth Profiles of the Mutants in a Rich Medium. Biotech. Biochem., 58 (12), 2232~2235, 1994.