Difference between revisions of "Part:BBa K3185004"
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==Usage and Biology== | ==Usage and Biology== | ||
| − | BaCBM2 is a Carbonhydrate-binding Module family 2(CBM2) derived from <i>Bacillus anthracis</i>.CBMs are protein domains mainly found in carbohydrate-active enzymes.According to an article[1], BaCBM2 is proved to have the highest binding ability to PET film, so we introduce this protain to the part as PET-binding protain. | + | BaCBM2 is a Carbonhydrate-binding Module family 2(CBM2) derived from <i>Bacillus anthracis</i>. CBMs are protein domains mainly found in carbohydrate-active enzymes. According to an article[1], BaCBM2 is proved to have the highest binding ability to PET film, so we introduce this protain to the part as PET-binding protain. |
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| − | As our project involves connecting different proteins, we decided to use the SpyTag/SpyCatcher system and have inserted the SpyCatcher at the N-terminal of the BaCBM2. When this part connected with SpyTag inserted Tm Encapsulin(りんく), the compound does complete work as flocculant. | + | As our project involves connecting different proteins, we decided to use the SpyTag/SpyCatcher system and have inserted the SpyCatcher at the N-terminal of the BaCBM2. When this part connected with SpyTag inserted Tm Encapsulin(りんく), the compound does complete work as flocculant. |
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| − | This part has three tags or binding sites;6xHis-tag,MYC-tag and TEV-binding site.6xHis-tag is inserted at the N-terminal of the SpyCatcher and used for affinity purification of this part.MYC-tag is also inserted between SpyCatcher and BaCBM2 in order to be detected with antiboby in Western brotting.TEV-binding site is inserted in the original article[2], and we left it as it was so as not to change the function, although the site is not used in our experiment. | + | This part has three tags or binding sites;6xHis-tag,MYC-tag and TEV-binding site.6xHis-tag is inserted at the N-terminal of the SpyCatcher and used for affinity purification of this part. MYC-tag is also inserted between SpyCatcher and BaCBM2 in order to be detected with antiboby in Western brotting. TEV-binding site is inserted in the original article[2], and we left it as it was so as not to change the function, although the site is not used in our experiment. |
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Revision as of 13:37, 8 October 2019
SPYCatcher -> BaCBM2
Usage and Biology
BaCBM2 is a Carbonhydrate-binding Module family 2(CBM2) derived from Bacillus anthracis. CBMs are protein domains mainly found in carbohydrate-active enzymes. According to an article[1], BaCBM2 is proved to have the highest binding ability to PET film, so we introduce this protain to the part as PET-binding protain.
As our project involves connecting different proteins, we decided to use the SpyTag/SpyCatcher system and have inserted the SpyCatcher at the N-terminal of the BaCBM2. When this part connected with SpyTag inserted Tm Encapsulin(りんく), the compound does complete work as flocculant.
This part has three tags or binding sites;6xHis-tag,MYC-tag and TEV-binding site.6xHis-tag is inserted at the N-terminal of the SpyCatcher and used for affinity purification of this part. MYC-tag is also inserted between SpyCatcher and BaCBM2 in order to be detected with antiboby in Western brotting. TEV-binding site is inserted in the original article[2], and we left it as it was so as not to change the function, although the site is not used in our experiment.
We lay this part on pET-11a plasmid between BamHI and NdeI restriction sites, and using the T7 promoter to express the resulting protein in BL21(DE3).
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Expression
- Cells were grown in 200ml LB media (100μg/ml Ampicillin) at 37oC shaking at 140 rpm to an OD600 of 0.5, verifying via a spectrophotometer.
- Protein was expressed in 0.1mM IPTG for 2hours.