Difference between revisions of "DAS - Distributed Annotation System"
Line 8: Line 8:
 
==DAS DSN Server==
 
==DAS DSN Server==
  
−
'''http://parts.mit.edu/das/dsn'''
+
'''https://parts.igem.org/das/dsn'''
 
* parts.mit.edu is a valid DAS server it will return the XML for the list of DAS services available on the server.
 
* parts.mit.edu is a valid DAS server it will return the XML for the list of DAS services available on the server.
  
 
==DAS Protein Annotation Server==
 
==DAS Protein Annotation Server==
  
−
'''http://parts.mit.edu/protein_annotations/entry_points'''
+
'''https://parts.igem.org/das/protein_annotations/entry_points'''
 
* A list of protein coding sequence parts that have swissprot numbers and can be understood by the DAS system.
 
* A list of protein coding sequence parts that have swissprot numbers and can be understood by the DAS system.
  
−
'''http://parts.mit.edu/protein_annotations/types'''
+
'''https://parts.igem.org/das/protein_annotations/types'''
 
* A list of the types that are valid for protein_annotations
 
* A list of the types that are valid for protein_annotations
  
−
'''http://parts.mit.edu/das/protein_annotations/features?selection=UniprotNumber'''
+
'''https://parts.igem.org/das/protein_annotations/features?selection=UniprotNumber'''
 
* Identification that the sequence exists
 
* Identification that the sequence exists
  
−
'''http://parts.mit.edu/das/protein_annotations/dna?selection=PartName:firstbase,lastbase'''
+
'''https://parts.igem.org/das/protein_annotations/dna?selection=PartName:firstbase,lastbase'''
 
*Returns XML containing the sequence for the given part from the firstbase to the last base specified
 
*Returns XML containing the sequence for the given part from the firstbase to the last base specified
  
Line 29: Line 29:
  
  
−
'''http://parts.mit.edu/das/parts/entry_points'''
+
'''https://parts.igem.org/das/parts/entry_points'''
 
* Returns an XML list of all available parts in the registry. The information includes the part name and sequence length.
 
* Returns an XML list of all available parts in the registry. The information includes the part name and sequence length.
  
−
'''http://parts.mit.edu/das/parts/features?segment=PartName:firstbase,lastbase'''
+
'''https://parts.igem.org/das/parts/features?segment=PartName:firstbase,lastbase'''
 
* Returns easy to read XML listing each feature in the part between firstbase and lastbase.
 
* Returns easy to read XML listing each feature in the part between firstbase and lastbase.
  
−
'''http://parts.mit.edu/das/dna?segment=PartName:firstbase,lastbase'''
+
'''https://parts.igem.org/das/dna?segment=PartName:firstbase,lastbase'''
 
* Returns the easy to read XML listing of the sequence for the part
 
* Returns the easy to read XML listing of the sequence for the part

Revision as of 14:20, 26 May 2008

"The distributed annotation system (DAS) is a client-server system in which a single client integrates information from multiple servers. It allows a single machine to gather up genome annotation information from multiple distant web sites, collate the information, and display it to the user in a single view. Little coordination is needed among the various information providers." - Wikipedia

The DAS interface to the Registry can provide sequence and feature information about any part in the Registry.

DAS information is available via the HTTP protocol. Note that only the Registry at parts.mit.edu is registered with the DASDY service at this time.

DAS DSN Server

https://parts.igem.org/das/dsn

  • parts.mit.edu is a valid DAS server it will return the XML for the list of DAS services available on the server.

DAS Protein Annotation Server

https://parts.igem.org/das/protein_annotations/entry_points

  • A list of protein coding sequence parts that have swissprot numbers and can be understood by the DAS system.

https://parts.igem.org/das/protein_annotations/types

  • A list of the types that are valid for protein_annotations

https://parts.igem.org/das/protein_annotations/features?selection=UniprotNumber

  • Identification that the sequence exists

https://parts.igem.org/das/protein_annotations/dna?selection=PartName:firstbase,lastbase

  • Returns XML containing the sequence for the given part from the firstbase to the last base specified


DAS Parts Server

https://parts.igem.org/das/parts/entry_points

  • Returns an XML list of all available parts in the registry. The information includes the part name and sequence length.

https://parts.igem.org/das/parts/features?segment=PartName:firstbase,lastbase

  • Returns easy to read XML listing each feature in the part between firstbase and lastbase.

https://parts.igem.org/das/dna?segment=PartName:firstbase,lastbase

  • Returns the easy to read XML listing of the sequence for the part