Difference between revisions of "Part:BBa K2669002:Experience"
Line 15: Line 15:
 
<html>
 
<html>
 
<img src="https://static.igem.org/mediawiki/parts/e/e7/T--Uppsala--10_Gen_IDTbb_ORI_IDT.jpeg" width="100%" height="100%">
 
<img src="https://static.igem.org/mediawiki/parts/e/e7/T--Uppsala--10_Gen_IDTbb_ORI_IDT.jpeg" width="100%" height="100%">
−
<p><b>Figure 3:</b> The result after 10 generations. The upper row represent 10 different colonies of the IDT optimized sequence of AmiLCP. The lower row represents the original AmilCP sequence. </p>
+
<p><b>Figure 3:</b> The result after 10 generations. The upper row represent 10 different colonies of the cells with the plasmid containing the IDT optimized sequence of AmilCP. The lower row represents the ones with the original AmilCP sequence incorporated in the plasmid. </p>
 
</html>
 
</html>
  
 
=== <p>Interpretation</p> ===  
 
=== <p>Interpretation</p> ===  
−
<p> Already after 10 generations it was clearly visible that the color intensity was better distributed in the IDT optimised AmilCP sequence colonies, since all of the colonies had a large color intensity while the original AmillCP sequence colonies had a larger variation in color intensity. This indicates that the stability of the IDT optimized AmilCP is greater than for the original AmilCP sequence.   
+
<p> Already after 10 generations it was clearly visible that the color intensity was better distributed in the cells containing the plasmid with the IDT optimised AmilCP sequence, since all of the colonies had a large color intensity while the cells with the plasmid containing the original AmillCP sequence had a larger variation in color intensity. This indicates that the stability of the cells containing the plasmid with the IDT optimised AmilCP sequence is greater than those with the original AmilCP sequence.   
  
 
{| class="wikitable" style="margin-left: auto; margin-right: auto; border: none;
 
{| class="wikitable" style="margin-left: auto; margin-right: auto; border: none;

Revision as of 15:40, 7 October 2018

Note that the results was gotten with the plasmid design represented in the composite part: IDT optimised AmilCP sequence

Transformation results

Figure 1:Transformation plate of colonies with the incorporated plasmid containing the IDT optimised original AmilCP sequence in the IDT supplied backbone. Colonies retrieved for the stability assay are circled..

Figure 2:Transformation plate of colonies with the incorporated plasmid containing the Original AmilCP sequence in the IDT supplied backbone. Colonies retrieved for the assay are circled.

Stability assay

Stability assay through liquid experiment was performed with all three plasmids in the IDT supplied backbone. 1 mL of LB with ampicillin (25 ug/ml) was inoculated with one single colony in eppendorf tubes in 10 replicates for each part. In order to allow 10 generations of growth, a 1:1000 dilution was made and incubated for 24 h. The colour comparison was done through visualization of centrifuged cultures and by analyzing the color intensity we could deduce the stability of the protein.

Figure 3: The result after 10 generations. The upper row represent 10 different colonies of the cells with the plasmid containing the IDT optimized sequence of AmilCP. The lower row represents the ones with the original AmilCP sequence incorporated in the plasmid.

Interpretation

Already after 10 generations it was clearly visible that the color intensity was better distributed in the cells containing the plasmid with the IDT optimised AmilCP sequence, since all of the colonies had a large color intensity while the cells with the plasmid containing the original AmillCP sequence had a larger variation in color intensity. This indicates that the stability of the cells containing the plasmid with the IDT optimised AmilCP sequence is greater than those with the original AmilCP sequence.

Generation Original AmilCP Colony 1 Original AmilCP Colony 2 Original AmilCP Colony 3 Original AmilCP Colony 4 Original AmilCP Colony 5 Original AmilCP Colony 6 Original AmilCP Colony 7 Original AmilCP Colony 8 Original AmilCP Colony 9 Original AmilCP Colony 10
10 +++ ++ +++ +++ ++ ++ +++ +++ +++ +

Table 1: Interpretation of color expression of the IDT optimised AmilCP sequence after 10 generations of growth. +++ represents strong color, ++ represents moderate color, + represents weak color and - represents no color.

Generation IDT Optimized AmilCP Colony 1 IDT Optimized AmilCP Colony 2 IDT Optimized AmilCP Colony 3 IDT Optimized AmilCP Colony 4 IDT Optimized AmilCP Colony 5 IDT Optimized AmilCP Colony 6 IDT Optimized AmilCP Colony 7 IDT Optimized AmilCP Colony 8 IDT Optimized AmilCP Colony 9 IDT Optimized AmilCP Colony 10
10 +++ +++ +++ +++ +++ +++ +++ +++ +++ +++

Table 2: Interpretation of color expression of the original AmilCP sequence after 10 generations of growth. +++ represents strong color, ++ represents moderate color, + represents weak color and - represents no color.

Applications

AmilCP can be used as a non quantitative reporter.

User Reviews

UNIQd087fde97fe3390d-partinfo-00000004-QINU

UNIQd087fde97fe3390d-partinfo-00000005-QINU