Difference between revisions of "Part:BBa K2586020"
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<partinfo>BBa_K2586020 parameters</partinfo>
 
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<partinfo>BBa_K2586007 short</partinfo>
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This part encodes for the 3-phosphoshikimate 1-carboxyvinyltransferase.
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The encoded enzyme is needed for the biosynthesis of essential aromatic amino acids in the shikimate pathway. Three essential aromatic amino acids are products of the pathway: Trp, Phe and Tyr. <i>aroA</i> is expressed in the <i> E.coli</i> wildtype. <br> <br>
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<i>aroA</i> encodes the 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase, which is the main target of the herbicide glyphosate and is strongly inhibited through glyphosate application. An amplification of <i>aroE/aroA</i> allows for glyphosate resistance (1), this is used in multiple GM plants to increase the yield and improve farming applications.
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If exposed to glyphosate, <i>E.coli</i> mutants will make changes in the original sequence of <i>aroA</i> to avoid the lethal effects of the substance.
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[[File:T--goettingen--BBa_K2586007_structureAroA.jpg|300px|right|thumb|'''Fig. 1.'''<b>Crystal structure of AroA</b>]]
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    <td class="tg-4ovm">Locus</td>
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    <td class="tg-9mbj">BSU29750</td>
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    <td class="tg-4ovm">Isoelectric point</td>
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    <td class="tg-9mbj">5.34<br></td>
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  </tr>
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    <td class="tg-4ovm">Molecular weight</td>
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    <td class="tg-9mbj">39.38 kDa</td>
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    <td class="tg-4ovm">Protein length</td>
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    <td class="tg-9mbj">358 aa</td>
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    <td class="tg-4ovm">Gene length</td>
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    <td class="tg-9mbj">1074 bp<br></td>
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    <td class="tg-4ovm">Function</td>
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    <td class="tg-9mbj">biosynthesis of aromatic amino acids</td>
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    <td class="tg-4ovm">Product</td>
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    <td class="tg-9mbj">3-deoxy-D-arabino-heptulosonate 7-phosphate synthase/<br>chorismate mutase-isozyme 3<br></td>
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    <td class="tg-4ovm">Essential</td>
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    <td class="tg-9mbj">no</td>
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    <td class="tg-4ovm">Synonyms</td>
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    <td class="tg-9mbj">aroG</td>
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===Usage and Biology===
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==Characterization==
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===<i>aroA</i> is essential in <i>B. subtilis </i>===
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[[File:T--goettingen--aroE essentiality.jpg|400px|thumb|'''Fig. 1.''' <b>The EPSP synthase is essential in <i>B. subtilis.</i></b> Transformation experiment to evaluate the essentiality of the EPSP synthase in B. subtilis. The bacteria were propagated on SP plates supplemented with spectinomycin and incubated for 24 h at 37°C.]]
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As essential bacterial genes appear to be more conserved than nonessential genes, the aroE gene probably does not permit the accumulation of mutations, which can be beneficial (Jordan et al., 2002). To confirm that the aroE gene is indeed essential, we transformed the B. subtilis with a PCR product consisting of DNA fragments flanking the target gene and the intervening spc spectinomycin gene (aroE::spc deletion cassette) and propagated the bacteria on SP rich medium plates (see Notebook). Several tiny colonies appeared on the transformation plates after 24 h of incubation. However, the potential transformants were not viable and supplementation of the agar plates with casamino acids also did not improve growth of the bacteria. Thus, under the tested conditions aroE seems to be essential in B. subtilis. Next, we tested whether the chromosomal copy of the aroE gene becomes dispensable for the bacteria carrying an EPSP synthase gene on a plasmid. For this purpose, we transformed the B. subtilis wild type strain 168 with the plasmids pIGEM2 and pBP143 containing the aroE and aroA EPSP synthase genes from B. subtilis and E. coli, respectively. The wild type carrying the empty plasmid pBQ200 served as a control. Next, we transformed the three strains with the aroE::spc deletion cassette and with chromosomal DNA of strain BP233 (gltT::spc), of which the latter served as the positive control. While we did not get transformants without DNA, many transformants appeared with chromosomal DNA of strain BP233 (Figure X). Moreover, the chromosomal copy of the aroE gene was only dispensable in strains carrying an extra EPSP synthase gene on a plasmid. To conclude, the aroE EPSP synthase gene is essential in B. subtilis. Moreover, the bacteria seem to require the enzymatic function of the EPSP synthase because also the enzyme from E. coli permits growth of the aroE mutant
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===Purification and ICTS with <i>aroA</i>===
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[[File:T--goettingen--aroE_aroA_Strep_ITC_Marburg.jpg|400px|thumb|'''Fig. 2.''' <b>(A)</b> Evaluation of the purification of the N-terminally Strep-tagged EPSP synthases from B. subtilis and E. coli Strep-AroE and Strep-AroA, respectively, by 12% SDS PAGE. The proteins were stained with Coomassie Brilliant Blue. M, unstained protein molecular weight marker Thermo Scientific; CE, crude extract; FT, flow through, W, washing steps; E, elution steps. (B) ITC measurements with Strep-AroE and Strep-AroA and glyphosate. (C) Control experiments with water and the calcium chelator EDTA.]]
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This year, our team came toghether with the iGEM team of Marburg, to investigate the interaction of the EPSP synthases AroE and AroA from B. subtilis and E. coli, respectively, with glyphosate. Glyphosate targets AroE and AroA in B. subtilis and E. coli, respectively (see Background information). Since the members of the Bange lab, which is hosting the iGEM team of Marburg, are experts in the field of Isothermal titration calorimetry (ITC), we did not hesitate to contact them for support. Our team cloned the aroE and aroA genes B. subtilis and E. coli, respectively, and the resulting constructs are suitable for overexpression of the Strep-tagged AroE and AroA enzymes in the E. coli strain BL21. The N-terminally Strep-tagged proteins can be purified by Streptactin:Strep-tag affinity purification system from the IBA, Göttingen. The purified proteins were send to the iGEM team in Marburg (Figure X). The ITC measurments were performed in Marburg. Unfortunately, not interaction between glyphosate and the EPSP synthases could be detected. The experiments will be repeated using freshly purified proteins.
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Revision as of 14:31, 9 October 2018


AroA*: Resistant aroA-variant in Escherichia coli

This part encodes a resistant variant to the native aroA gene in Escherichia coli. The resistance occurs due to 2 point mutations within the DNA sequence. At position 287 a Guanin was changed to a Cytosin and at position 547 a Guanin was changed to an Adenin.

This part can be used to confer glyphosate resistance to bacteria, as the mutation decreases the interaction of the herbicide with the EPSP-Synthase, which is encoded by the native aroA gene.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 346
    Illegal AgeI site found at 787
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 1021


aroA: 3-phosphoshikimate 1-carboxyvinyltransferase

This part encodes for the 3-phosphoshikimate 1-carboxyvinyltransferase. The encoded enzyme is needed for the biosynthesis of essential aromatic amino acids in the shikimate pathway. Three essential aromatic amino acids are products of the pathway: Trp, Phe and Tyr. aroA is expressed in the E.coli wildtype.

aroA encodes the 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase, which is the main target of the herbicide glyphosate and is strongly inhibited through glyphosate application. An amplification of aroE/aroA allows for glyphosate resistance (1), this is used in multiple GM plants to increase the yield and improve farming applications. If exposed to glyphosate, E.coli mutants will make changes in the original sequence of aroA to avoid the lethal effects of the substance.

Fig. 1.Crystal structure of AroA


Locus BSU29750
Isoelectric point 5.34
Molecular weight 39.38 kDa
Protein length 358 aa
Gene length 1074 bp
Function biosynthesis of aromatic amino acids
Product 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase/
chorismate mutase-isozyme 3
Essential no
Synonyms aroG