Difference between revisions of "Part:BBa K2403005"
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<!-- Add more about the biology of this part here--> | <!-- Add more about the biology of this part here--> | ||
| − | + | ==Usage and Biology== | |
In order to kill pine wood nematodes by feeding RNAi, we made hairpin loop-dsRNA targeted to the nematodes expressed in budding yeast serving as feed. We used ''' [https://parts.igem.org/Part:BBa_J63006 BBa_J63006] ''' as a promoter in that case. This part was used to express hairpin-dsRNA in budding yeast by adding loop [1], [2] to ''' [https://parts.igem.org/Part:BBa_J63006 BBa_J63006] '''. You can create plasmid transcribing dsRNA with hairpin loop which can be expressed in budding yeast by cleaving with restriction enzyme <i>Not1</i>, connecting sense part between the loop part and the promoter, further cleaving with a restriction enzyme, <i>Hind 3 </i>sand connecting antisense strand. | In order to kill pine wood nematodes by feeding RNAi, we made hairpin loop-dsRNA targeted to the nematodes expressed in budding yeast serving as feed. We used ''' [https://parts.igem.org/Part:BBa_J63006 BBa_J63006] ''' as a promoter in that case. This part was used to express hairpin-dsRNA in budding yeast by adding loop [1], [2] to ''' [https://parts.igem.org/Part:BBa_J63006 BBa_J63006] '''. You can create plasmid transcribing dsRNA with hairpin loop which can be expressed in budding yeast by cleaving with restriction enzyme <i>Not1</i>, connecting sense part between the loop part and the promoter, further cleaving with a restriction enzyme, <i>Hind 3 </i>sand connecting antisense strand. | ||
| − | + | ==Characterization== | |
The expression level of dsRNA was assayed using Gal1 promoter (BBa_ J63006) and GPD promoter (BBa_ K517001) to characterize the RNA expression ability of these promoter parts. | The expression level of dsRNA was assayed using Gal1 promoter (BBa_ J63006) and GPD promoter (BBa_ K517001) to characterize the RNA expression ability of these promoter parts. | ||
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| − | + | ==Reference== | |
For the sequence of the loop part used for Hairpin loop-dsRNA expression, the following paper was referred to. | For the sequence of the loop part used for Hairpin loop-dsRNA expression, the following paper was referred to. | ||
[1]https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3786161/pdf/nihms-516215.pdf | [1]https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3786161/pdf/nihms-516215.pdf | ||
Revision as of 09:37, 1 November 2017
Gal1 promoter>loop for dsRNA
This parts can be used for expressing dsRNA in Saccharomyces Cerevisiae.
Usage and Biology
In order to kill pine wood nematodes by feeding RNAi, we made hairpin loop-dsRNA targeted to the nematodes expressed in budding yeast serving as feed. We used BBa_J63006 as a promoter in that case. This part was used to express hairpin-dsRNA in budding yeast by adding loop [1], [2] to BBa_J63006 . You can create plasmid transcribing dsRNA with hairpin loop which can be expressed in budding yeast by cleaving with restriction enzyme Not1, connecting sense part between the loop part and the promoter, further cleaving with a restriction enzyme, Hind 3 sand connecting antisense strand.
Characterization
The expression level of dsRNA was assayed using Gal1 promoter (BBa_ J63006) and GPD promoter (BBa_ K517001) to characterize the RNA expression ability of these promoter parts.
The results of the detection by qRT-PCR were as follows
Reference
For the sequence of the loop part used for Hairpin loop-dsRNA expression, the following paper was referred to. [1]https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3786161/pdf/nihms-516215.pdf [2]http://genesdev.cshlp.org/content/18/19/2359.long
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NotI site found at 550
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 150
- 1000COMPATIBLE WITH RFC[1000]