Difference between revisions of "Part:BBa K2308002"
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<p>In the experiment, sYFP2 was designed to be fused to the C-terminal of subunit H in the reaction center(RC) of <i>Rhodobacter sphaeroides 2.4.1.</i> </p>
 
<p>In the experiment, sYFP2 was designed to be fused to the C-terminal of subunit H in the reaction center(RC) of <i>Rhodobacter sphaeroides 2.4.1.</i> </p>
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<img src="https://static.igem.org/mediawiki/2017/5/59/Fusion_protein.gif" alt="">
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<img class="featuredparts-img" src="https://static.igem.org/mediawiki/2017/5/59/Fusion_protein.gif" alt="">
 
<center><p style="font-size: 10px;">Figure 1：Modelling of RC-sYFP2 (GIF)</p></center>
 
<center><p style="font-size: 10px;">Figure 1：Modelling of RC-sYFP2 (GIF)</p></center>
 
<br><br>
 
<br><br>
  
 
<p>In fusion expression experiment: we constructed the plasmid using part BBa_K2308002, and after transformation and gene recombination, single clones are selected by antibiotics and PCR tests. </p>
 
<p>In fusion expression experiment: we constructed the plasmid using part BBa_K2308002, and after transformation and gene recombination, single clones are selected by antibiotics and PCR tests. </p>
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<img src="https://static.igem.org/mediawiki/2017/0/04/F1-B.jpg" alt="">
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<img class="featuredparts-img" src="https://static.igem.org/mediawiki/2017/0/04/F1-B.jpg" alt="">
 
<center><p style="font-size: 10px;">Figure 2：PCR test of BBa_K2308002</p></center>
 
<center><p style="font-size: 10px;">Figure 2：PCR test of BBa_K2308002</p></center>
 
<br><br>
 
<br><br>
  
 
<p>Fluorescence image shows sYFP2 which is fused with H submit of <i>Rhodobacter sphaeroides 2.4.1</i> ’s reaction center folded correctly and was able to emit fluorescence. </p>
 
<p>Fluorescence image shows sYFP2 which is fused with H submit of <i>Rhodobacter sphaeroides 2.4.1</i> ’s reaction center folded correctly and was able to emit fluorescence. </p>
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<img src="https://static.igem.org/mediawiki/2017/b/b9/F3.jpg" alt="">
+
<img class="featuredparts-img" src="https://static.igem.org/mediawiki/2017/b/b9/F3.jpg" alt="">
 
<center><p style="font-size: 10px;">Figure 3：Fluorescence image of whole cells of RC-SYFP2 cells when excited at 495nm</p></center>
 
<center><p style="font-size: 10px;">Figure 3：Fluorescence image of whole cells of RC-SYFP2 cells when excited at 495nm</p></center>
 
<br><br>
 
<br><br>
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<img src="https://static.igem.org/mediawiki/2017/3/34/F2.png" alt="">
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<img class="featuredparts-img" src="https://static.igem.org/mediawiki/2017/3/34/F2.png" alt="">
 
<center><p style="font-size: 10px;">Figure 4：Absorption spectra of RC-sYFP2 strains compared with wild type.</p></center>
 
<center><p style="font-size: 10px;">Figure 4：Absorption spectra of RC-sYFP2 strains compared with wild type.</p></center>
 
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<p> The RC-sYFP2 fusion strain was created in a wild type background. Absorption spectrum of membranes from this strain recorded at room temperature show no isolated sYFP2 peak due to overlap with absorption of carotenoid B at 514 nm.</p>
 
<p> The RC-sYFP2 fusion strain was created in a wild type background. Absorption spectrum of membranes from this strain recorded at room temperature show no isolated sYFP2 peak due to overlap with absorption of carotenoid B at 514 nm.</p>
−
<img src="https://static.igem.org/mediawiki/2017/4/42/F4.png" alt="">
+
<img class="featuredparts-img" src="https://static.igem.org/mediawiki/2017/4/42/F4.png" alt="">
 
<center><p style="font-size: 10px;">Figure 5：Growth rate of WT and WT RC-sYFP2.</p></center>
 
<center><p style="font-size: 10px;">Figure 5：Growth rate of WT and WT RC-sYFP2.</p></center>
 
<br><br>
 
<br><br>
  
 
<p>The biomass of Rhodobacter sphaeroides 2.4.1 didn’t arise very much since the energy from sYFP2 is too little.</p>
 
<p>The biomass of Rhodobacter sphaeroides 2.4.1 didn’t arise very much since the energy from sYFP2 is too little.</p>

Revision as of 09:58, 31 October 2017


sYFP2 knock In for fusion expression

This part is used to knock in the gene sYFP2 in Rhodobacter Sphaeroides, replacing the end coden of gene puhA, and sYFP2 will be expressed with H-subunit of light reaction center as fusion protein. The part is composed of 404bp of upstream DNA sequence(the end coden of puhA is not included) and 720bp coding sequence of sYFP2 (Part:BBa_K2308003) and 562bp of downstream DNA sequence. After homologous recombination, sYFP2 will be expressed with the H-subunit through fusion expression.





Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 319
    Illegal BamHI site found at 1217
    Illegal XhoI site found at 96
    Illegal XhoI site found at 159
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 36
    Illegal NgoMIV site found at 54
    Illegal NgoMIV site found at 336
  • 1000
    COMPATIBLE WITH RFC[1000]



BBa_K2308002 is an important part in our experiment. It is composed of BBa_K2308006，BBa_K2308003 and BBa_K2308007. The function of this part is to carry out the homologous recombination on the genome of Rhodobacter sphaeroides 2.4.1.



In the experiment, sYFP2 was designed to be fused to the C-terminal of subunit H in the reaction center(RC) of Rhodobacter sphaeroides 2.4.1.

<img class="featuredparts-img" src="Fusion_protein.gif" alt="">

Figure 1：Modelling of RC-sYFP2 (GIF)



In fusion expression experiment: we constructed the plasmid using part BBa_K2308002, and after transformation and gene recombination, single clones are selected by antibiotics and PCR tests.

<img class="featuredparts-img" src="F1-B.jpg" alt="">

Figure 2：PCR test of BBa_K2308002



Fluorescence image shows sYFP2 which is fused with H submit of Rhodobacter sphaeroides 2.4.1 ’s reaction center folded correctly and was able to emit fluorescence.

<img class="featuredparts-img" src="F3.jpg" alt="">

Figure 3：Fluorescence image of whole cells of RC-SYFP2 cells when excited at 495nm



<img class="featuredparts-img" src="F2.png" alt="">

Figure 4：Absorption spectra of RC-sYFP2 strains compared with wild type.




The RC-sYFP2 fusion strain was created in a wild type background. Absorption spectrum of membranes from this strain recorded at room temperature show no isolated sYFP2 peak due to overlap with absorption of carotenoid B at 514 nm.

<img class="featuredparts-img" src="F4.png" alt="">

Figure 5：Growth rate of WT and WT RC-sYFP2.



The biomass of Rhodobacter sphaeroides 2.4.1 didn’t arise very much since the energy from sYFP2 is too little.