Difference between revisions of "Part:BBa K2114017"
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[[File:iG16_schematic_BBa_K2114017.png|350px|thumb|left|Figure 1: Schematic representation of the fusion protein.]] | [[File:iG16_schematic_BBa_K2114017.png|350px|thumb|left|Figure 1: Schematic representation of the fusion protein.]] | ||
− | + | This part includes the anti-GFP nanobody [1] fused by an alpha helical linker [2] to the B. subtilis spore crust gene cgeA in order to be displayed on the spore surface. The hemagglutinin epitope tag was included in the fusion construct for convenient detection by specific anti-HA antibodies. The cotG gene was amplified from the genome of B. subtilis and the anti-GFP nanobody was amplified from an expression plasmid. The HA tag and the alpha helical linker were introduced by primer extensions. Both PCR fragments were assembled by Gibson cloning into pSB1C3. The fusion construct can released by XbaI and PstI and cloned alongside with an appropriate promoter into an integration vector for B. subtilis by 3A assembly [3]. | |
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===Characterization=== | ===Characterization=== |
Revision as of 22:57, 19 October 2016
aGFPnano_HA_aHelix_cgeA
N-terminal fusion of anti-GFP nanobody to spore crust gene cgeA by an alpha helical linker.
Usage and Biology
This part includes the anti-GFP nanobody [1] fused by an alpha helical linker [2] to the B. subtilis spore crust gene cgeA in order to be displayed on the spore surface. The hemagglutinin epitope tag was included in the fusion construct for convenient detection by specific anti-HA antibodies. The cotG gene was amplified from the genome of B. subtilis and the anti-GFP nanobody was amplified from an expression plasmid. The HA tag and the alpha helical linker were introduced by primer extensions. Both PCR fragments were assembled by Gibson cloning into pSB1C3. The fusion construct can released by XbaI and PstI and cloned alongside with an appropriate promoter into an integration vector for B. subtilis by 3A assembly [3].
Characterization
I) Surface Localization
II) GFP binding
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 681
- 1000COMPATIBLE WITH RFC[1000]