Difference between revisions of "Part:BBa K1972008"
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<partinfo>BBa_K1972008 parameters</partinfo>
 
<partinfo>BBa_K1972008 parameters</partinfo>
 
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[[File:T--SCUT-China A--u26.png|800px||center|]]
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Figure 1. Bio-circuit of BBa_K1972014：Final optimized with dszB copy number increased
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[[File:T--SCUT-China A--u29.png|200px||center|]]
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Figure 2. Bio-circuit of BBa_K1972008: dszB with tac promoter
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Finally, we increased DszB copy number to gain higher efficiency of desulfurization (as shown in Figure 1). We also cultured the recombinant strain BL21-dszB (as shown in Figure 2), and add it (0.5 mgprotein/mL) to the recombinant strain BL21-dszBBACD (optimized)
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[[File:T--SCUT-China A--u27.jpg|800px||center|]]
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Figure 3. The desulfurization results of Recombinant strain BL21-dszBBACD (optimized) addition of cell extract from the recombinant strain BL21-dszB tested by HPLC
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The desulfurization efficiency of the recombinant strain BL21-dszBBACD (optimized) addition of cell extract from the recombinant strain BL21-dszB is further improved (as shown in Figure 3).
 +
To know our project working under real industrial condition, we used n-dodecane with DBT (final concentration is 1mM) to simulate oil and the ratio of organic mixture and water is 1:9, which was based on our mathematic modeling.
 +
We added induced bacteria into the mixed system at an initial A600 of 2.0. After the reaction of 6 hours, we took 1 ml sample which would be tested by HPLC (as shown in Figure 4).
 +
The result shows clearly the generation of 2-HBP which means success of our project. Because it’s only a pre-experiment that we didn’t use equipment such as ultrasonator, the result does not show a high-efficiency desulfurization. We will do 2L-system desulfurization experiment in the next step.
 +
[[File:T--SCUT-China A--u28.jpg|800px||center|]]
 +
 +
Figure 4. The elements of oil phase and aqueous phase after 6h-reaction
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The result shows significant conclusions which will guide us in the next step:
 +
a.The elements of oil will nearly not be metabolized or absorbed by our engineered bacteria in oil-water phrases.
 +
b.Our engineered bacteria can convert DBT into 2-HBP successfully in oil-water phrases.
 +
c.Very little organic elements will be left in aqueous phase.

Revision as of 15:25, 25 October 2016


dszB with tac promoter induced by IPTG

We constructed dszB with tac promoter. DszB is a a desulfinase which can convert 2-(2-hydroxybiphenyl) sulfinate (HBPS) to 2-hydroxybiphenyl (2HBP) during the 4S pathway, in which dibenzothiophene (DBT) undergoes three successive oxidation steps and one a hydrolytic step leading to the formation of 2-hydroxybiphenyl (2HBP)

This single desulfinase gene was synthesized whith E.coli codon optimized by Generay and the sequence was found in NCBI (GenBank Accession number L37363.1)

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 267
    Illegal AgeI site found at 1104
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 864


T--SCUT-China A--u26.png

Figure 1. Bio-circuit of BBa_K1972014：Final optimized with dszB copy number increased

T--SCUT-China A--u29.png

Figure 2. Bio-circuit of BBa_K1972008: dszB with tac promoter

Finally, we increased DszB copy number to gain higher efficiency of desulfurization (as shown in Figure 1). We also cultured the recombinant strain BL21-dszB (as shown in Figure 2), and add it (0.5 mgprotein/mL) to the recombinant strain BL21-dszBBACD (optimized)

T--SCUT-China A--u27.jpg

Figure 3. The desulfurization results of Recombinant strain BL21-dszBBACD (optimized) addition of cell extract from the recombinant strain BL21-dszB tested by HPLC The desulfurization efficiency of the recombinant strain BL21-dszBBACD (optimized) addition of cell extract from the recombinant strain BL21-dszB is further improved (as shown in Figure 3). To know our project working under real industrial condition, we used n-dodecane with DBT (final concentration is 1mM) to simulate oil and the ratio of organic mixture and water is 1:9, which was based on our mathematic modeling. We added induced bacteria into the mixed system at an initial A600 of 2.0. After the reaction of 6 hours, we took 1 ml sample which would be tested by HPLC (as shown in Figure 4). The result shows clearly the generation of 2-HBP which means success of our project. Because it’s only a pre-experiment that we didn’t use equipment such as ultrasonator, the result does not show a high-efficiency desulfurization. We will do 2L-system desulfurization experiment in the next step.

T--SCUT-China A--u28.jpg

Figure 4. The elements of oil phase and aqueous phase after 6h-reaction The result shows significant conclusions which will guide us in the next step: a.The elements of oil will nearly not be metabolized or absorbed by our engineered bacteria in oil-water phrases. b.Our engineered bacteria can convert DBT into 2-HBP successfully in oil-water phrases. c.Very little organic elements will be left in aqueous phase.