Difference between revisions of "Part:BBa K2013003"
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==Experimental Validation== | ==Experimental Validation== | ||
| − | This part is validated through | + | This part is validated through five ways: amplification, PCR, Enzyme cutting, SDS-PAGE and Sequence. |
===Amplification=== | ===Amplification=== | ||
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https://static.igem.org/mediawiki/2016/9/97/T--UESTC-China--BBa_K2013003-Double_digestion.png | https://static.igem.org/mediawiki/2016/9/97/T--UESTC-China--BBa_K2013003-Double_digestion.png | ||
| + | |||
| + | ===SDS-PAGE=== | ||
Revision as of 13:11, 19 October 2016
RBS and MHETase
This part contains the coding sequence of MHETase which can hydrolyzes MHET to TPA and EG. MHETase is second enzymes on the downstream of PETase in the bacterium Ideonella sakaiensis 201-F6 that Japanese scientists found.MHET is degraded into two kinds of natural environment harmless substances: terephthalic acid and ethylene glycol. In addition，we did codon optimization before synthesizing it to encode the target product successfully in E. coli.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 579
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 264
Illegal NgoMIV site found at 378
Illegal NgoMIV site found at 834
Illegal AgeI site found at 331
Illegal AgeI site found at 448 - 1000COMPATIBLE WITH RFC[1000]
Experimental Validation
This part is validated through five ways: amplification, PCR, Enzyme cutting, SDS-PAGE and Sequence.
Amplification
Enzyme:Q5
Primer-F:5′- GAATTCGCGGCCGCTTCTAGAGTACTAGAGTCACACAAAAGGGTACTAGATG-3′
Primer-R:5′- CGCTACTAGTATTATTACGGCGGAGCCGCGCAC-3′
Results
PCR
Enzyme:Taq
Primer-F:5′-CCACCTGACGTCTAAGAAAC-3′
Primer-R:5′-GTATTACCGCCTTTGAGTGA-3′
Results
Double digestion
After the assembly ,the plasmid was transferred into the Competent E. coli top10. After culturing overnight in LB,we minipreped the plasmid for double digestion .The first cutting procedure was performed with EcoRI and HindIII restriction endonuclease. The second cutting procedure was performed with PstI and BaHI restriction endonuclease.The plasmid was cutted in a 25μL system at 37 ℃ for 1 hours. The Electrophoresis was performed on a 1％ Agarose glu.
Results
SDS-PAGE
