Difference between revisions of "Part:BBa K592003"
| Line 35: | Line 35: | ||
<br/> | <br/> | ||
<span><h2>References:</h2></span><br/> | <span><h2>References:</h2></span><br/> | ||
| − | <span>Hirose Y, Shimada T, Narikawa R, Katayama M, Ikeuchi M (2008)''Cyanobacteriochrome CcaS is the green light receptor that induces the expression of''''phycobilisome linker protein.'' Proc Natl Acad Sci U S A 105: 9528-9533.<br/> | + | <span>1. Hirose Y, Shimada T, Narikawa R, Katayama M, Ikeuchi M (2008)''Cyanobacteriochrome CcaS is the green light receptor that induces the expression of''''phycobilisome linker protein.'' Proc Natl Acad Sci U S A 105: 9528-9533.<br/> |
| − | Tabor, J. J., Levskaya, A., and Voigt, C. A. (2011). ''Multichromatic control of gene''expression in Escherichia coli.'' J. Mol. Biol. 405, 2, 315–324.<br/> | + | 2.Tabor, J. J., Levskaya, A., and Voigt, C. A. (2011). ''Multichromatic control of gene''expression in Escherichia coli.'' J. Mol. Biol. 405, 2, 315–324.<br/> |
| − | + | 3.Sebastian R. Schmidl, Ravi U. Sheth, Andrew Wu, and Jeffrey J. Tabor. Refactoring and Optimization of Light-Switchable Escherichia coli Two-Component Systems. ACS Synth. Biol. 2014, 3, 820−831</span></p> | |
<div><br/> | <div><br/> | ||
Revision as of 10:34, 17 October 2016
PcpcG2 promoter, ccaR-regulated
PcpcG2 is the green-light activated promoter from the genome of Synechocystis PCC6803. This 238 bp sequence is used by Jeffrey Tabor in pJT122 plasmid and contains the entire region upstream of cpcG2 and downstream of ccaR (Tabor et al. 2011). PcpcG2 is regulated by the light-activation of ccaS/ccaR. The gene downstream to this promoter is transcribed upon activation by ccaS/ccaR, via green light.
Promoter cpcG2 is a 238bp green-light activated promoter from the genome of Synechocystis PCC6803. We tested the efficiency of the promoter by measuring the fluorescence of output sfGFP when bacteria are illuminated with green, red or no light. (For more detail, please view our wiki: http://2016.igem.org/Team:HZAU-China/Experiments)
Figure 1. Mechanism of CcaS-CcaR system.
CcaS is produced in a green-absorbing ground state, termed Pg. Absorption of green light flips CcaS to a kinase-active red-absorbing state (Pr) that phosphorylates the response regulator CcaR, which then binds to the G-box operator within cpcG2 promoter and activates transcription. Absorption of red light switches CcaS Pr back to Pg, which dephosphorylates P-CcaR, deactivating transcription.
Figure 2. Mean fluorescence output in CcaS-CcaR system.
As is shown in the figure, in E.coli strain JT2, PcpcG2 produces 266.0 ± 19.3 and 509.0 ± 55.4 au of sfGFP in red and green light, corresponding to 1.91 ± 0.34-fold activation, demonstrating that PcpcG2 is functionally regulated by light, green-activated and red-repressed.
However, the figure also shows that that leaked expression is severe in dark surroundings. To better respond to red and green light, we optimized the promoter by refactoring it and created an innovative promoter, PcpcG2-172, with the truncation of a constitutive promoter within the cpcG2 promoter (BBa_K2012015. For more detail, please view our wiki: http://2016.igem.org/Team:HZAU-China/Experiments).
References:
1. Hirose Y, Shimada T, Narikawa R, Katayama M, Ikeuchi M (2008)''Cyanobacteriochrome CcaS is the green light receptor that induces the expression of''''phycobilisome linker protein.'' Proc Natl Acad Sci U S A 105: 9528-9533.
2.Tabor, J. J., Levskaya, A., and Voigt, C. A. (2011). ''Multichromatic control of gene''expression in Escherichia coli.'' J. Mol. Biol. 405, 2, 315–324.
3.Sebastian R. Schmidl, Ravi U. Sheth, Andrew Wu, and Jeffrey J. Tabor. Refactoring and Optimization of Light-Switchable Escherichia coli Two-Component Systems. ACS Synth. Biol. 2014, 3, 820−831
Usage and Biology
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]