Difference between revisions of "Part:BBa K1720003"

Revision as of 12:53, 5 September 2015

Human phosphodiesterase 5A gene silencing device NO.1

This device is uesd for silencing the human phosphodiesterase 5A (PDE5A) gene.A U6 promoter driving a designed, synthetic shRNA-like miRNA followed by the terminator.

PDE5A is a cGMP-binding, cGMP-specific phosphodiesterase, a member of the cyclic nucleotide phosphodiesterase family. This phosphodiesterase specifically hydrolyzes cGMP to 5'-GMP. It is involved in the regulation of intracellular concentrations of cyclic nucleotides and is important for smooth muscle relaxation in the cardiovascular system.

We designed 3 silencing device and test their function at the same time.Here is the another two device :BBa_K1720004,BBaK172005

This device with a GFP reporter was then transfected into HEK293 cells by lentiviral vector.Once we silence the PDE5A gene the level of cGMP will be up regulated as a result. The positive control was HEK293 cells that treat with Sodium Nitroprusside ,a NO donator that activate sGC and up regulate the level of cGMP. A negative control was made by transfecting an empty vector that does not contain scilencing device. We used Elisa to detect cGMP level. The results are as follow:

Green fluorescence signal was observed under fluorescence microscope

cGMP concentration after treat with differenct scilencing device

cGMP concentration after treat with 10umol/L SNP for different time gradient

Sequence and Features

Vector Map：

Vector Components:

Virus Titer: (3.23±2)×10^8 TU/ml

Funtional titer is determined based on q-PCR amplification of a small fragment from the lentiviral vector-WRPE that is integrated into the genome of transduced 293T cells.

Experiment 1:

At the beginning of our experiment, we aimed to prove that HEK293 cells can be transfected by our vector. In our vector we inserted EGFP gene as a repoter.Once HEK293 cells are transfected successfully green fluorescence signal will be observed under fluorescence microscope.

Protocol： 1. Seed cells to be 40% confluent at a 35mm culture dish.

2. Dilute 10ul lentiviral vector in 1ml DMEM medium containing 10% FBS

3. Withdraw culture medium from 35mm culture dish.

4. Add vector-DMEM complex to cells

5. Incubate for 15 hours.

6. Withdraw vector-DMEM complex from culture dish.

7. Add 2ml DMEM medium containing 10% FBS to cells and incubate for 10 hours

8. Observe the cells under Inverted fluorescence microscope.

Result:

From the picture we can see that vivo green fluorescence signal was observed which indicated that HEK293 cells had been transfected successfully!

Experiment 2:

After we proved that HEK293 cells can be transfected, PDE5A gene expression levels were determined by real-time PCR.

Protocol：

Result:

Experiment 3:

After we scilencing the PDE5A gene,we used cGMP Elisa kit to detect the cGMP concentration to see whether cGMP concentration can be up regulated by our scilencing device.

Protocol：

1. Prepare all standards and samples be added in duplicate to the micro elisa stripplate.

2. Add standard : Set Standard wells , testing sample wells. Add standard 50 μl to standard well .

3. Add testing sample 10 μl then add Sample Diluent 40 μl to testing sample well (samples were 5 times diluted ) ; Blank well doesn’t add anyting.

4. Add 100 μl of HRP-conjugate reagent to each well , cover with an adhesive strip and incubate for 60 minutes at 37°C.

5. Aspirate each well and wash by filling each well with Wash Solution (400μl ), repeating the process four times for a total of five washes. After the last wash, remove any remaining Wash Solution by decanting. Invert the plate and blot it against clean paper towels.

6. Add chromogen solution A 50μl and chromogen solution B 50μl to each well.Gently mix and incubate for 15 minutes at 37 C . Protect from light .

7. Add 50μl Stop Solution to each well.

8. Read the Optical Density ( O . D .) at 450 nm using a Microplate Reader.

Note:

1.Standard ( S0 → S5 ) concentration was followed by: 0,2,4,8,16,32 nmol/L.

2.We used BCA protein assay kit to detect total protein level as a internal reference and the result was corrected by it.

Result:

Experiment 4:

We used sodium nitroprusside(SNP) ,a NO donator that activate sGC and up regulate the level of cGMP, as a positive control.

Protocol

1. Seed cells to be 90% confluent at 35mm culture dish.

2. Dilute 20ul SNP (0.1ul mol/L) and 20ul cysteine (0.2ul mol/L) in 1960ul DMEM medium containing 10% FBS

3.Withdraw culture medium from 35mm culture dish

4.Add the mixture in step 2 to the cells

5. Incubate for 10min,20min,30min,60min,90min

6. Use cGMP Elisa kit to detect the cGMP concentration

Note: 1. We used cysteine to help SNP release NO 2.Cysteine will cause interference when we use BCA protein assay kit to detect total protein level as a internal reference, so we make two control. One of the control was treat by the same amount of cysteine,

 the other was treat with DMEM medium to cut down the background caused by cysteine.

Result:

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