Difference between revisions of "Part:BBa K1847009"

 
Line 1: Line 1:
−
 
 
__NOTOC__
 
__NOTOC__
 
<partinfo>BBa_K1847009 short</partinfo>
 
<partinfo>BBa_K1847009 short</partinfo>
Line 5: Line 4:
 
Collection of promoters regulated by LldR.
 
Collection of promoters regulated by LldR.
  
−
<!-- Add more about the biology of this part here
 
−
===Usage and Biology===
 
−
 
−
<!-- -->
 
 
<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K1847009 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K1847009 SequenceAndFeatures</partinfo>
 +
 +
 +
===Usage and Biology===
 +
 +
 +
 +
{|class="wikitable"
 +
|-
 +
! !!J23118-B0034-lldR!!J23118-B0034-lldP-lldR!!J23114-B0032-lldP-lldR
 +
|-
 +
! rowspan="4" scope="row" | Coefficient values
 +
| K=977.5  (812.6, 1142) || K=2361  (1051, 3671) || K=459.8  (121.5, 798)
 +
|-
 +
| al =  1.1e+04  (fixed at bound)||al = 516.7  (-1522, 2555)||al = 1.775e+04  (1.619e+04, 1.93e+04)
 +
|-
 +
| mu =  1.717e+04  (1.634e+04, 1.8e+04)||mu = 1.256e+04  (9078, 1.603e+04)||mu = 1.711e+04  (1.366e+04, 2.057e+04)
 +
|-
 +
| n1 =      1.084  (0.8159, 1.352)|| n1 =      0.7986  (0.3991, 1.198)||n1 =      0.7485  (0.3491, 1.148)
 +
|-
 +
!rowspan="5" scope="row"|Goodness to fit
 +
|  sse: 5.5485e+08||sse: 3.3911e+08||sse: 9.3519e+09
 +
|-
 +
|rsquare: 0.9967||rsquare: 0.9894||rsquare: 0.9835
 +
|-
 +
|fe: 8||dfe: 7|| dfe: 7
 +
|-
 +
|adjrsquare: 0.9959||adjrsquare: 0.9848||adjrsquare: 0.9764
 +
|-
 +
|rmse: 8.3280e+03||rmse: 6.9602e+03||rmse: 3.6551e+04
 +
|}
 +
 +
<div style="margin:auto;width:880px">
 +
<ul>
 +
<li class="graphthumb" style="display:inline-block;width:33%">[[Image:ETH15_P71_highLldr.png|thumb|260px|Dose-response curve for our promoter with J23118-B0034-lldR]]</li>
 +
<li class="graphthumb" style="display:inline-block;width:33%">[[Image:ETH15_P71_highLldPR.png|thumb|260px|Dose-response curve for our promoter with J23114-B0032-lldP-lldR]]</li>
 +
<li class="graphthumb" style="display:inline-block;width:33%">[[Image:ETH15_P71_highLldr.png|thumb|260px|Dose-response curve for our promoter with J23118-B0032-lldP-lldR]]</li>
 +
</ul>
 +
</div>
  
  

Revision as of 12:27, 14 September 2015

lldRO1-J23118-lldRO2

Collection of promoters regulated by LldR.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 78
    Illegal NheI site found at 101
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Usage and Biology

J23118-B0034-lldR J23118-B0034-lldP-lldR J23114-B0032-lldP-lldR
Coefficient values K=977.5 (812.6, 1142) K=2361 (1051, 3671) K=459.8 (121.5, 798)
al = 1.1e+04 (fixed at bound) al = 516.7 (-1522, 2555) al = 1.775e+04 (1.619e+04, 1.93e+04)
mu = 1.717e+04 (1.634e+04, 1.8e+04) mu = 1.256e+04 (9078, 1.603e+04) mu = 1.711e+04 (1.366e+04, 2.057e+04)
n1 = 1.084 (0.8159, 1.352) n1 = 0.7986 (0.3991, 1.198) n1 = 0.7485 (0.3491, 1.148)
Goodness to fit sse: 5.5485e+08 sse: 3.3911e+08 sse: 9.3519e+09
rsquare: 0.9967 rsquare: 0.9894 rsquare: 0.9835
fe: 8 dfe: 7 dfe: 7
adjrsquare: 0.9959 adjrsquare: 0.9848 adjrsquare: 0.9764
rmse: 8.3280e+03 rmse: 6.9602e+03 rmse: 3.6551e+04
  • Dose-response curve for our promoter with J23118-B0034-lldR
  • Dose-response curve for our promoter with J23114-B0032-lldP-lldR
  • Dose-response curve for our promoter with J23118-B0032-lldP-lldR