Difference between revisions of "Part:BBa K1398002"

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The protein has been codon-optimised for expression in E. coli.
 
The protein has been codon-optimised for expression in E. coli.
  
The Exeter 2014 team used Raman spectroscopy to show the breakdown of Nitroglycerin by NemA:
+
The Exeter 2014 team used Raman spectroscopy to show the breakdown of Nitroglycerin by NemA. The image below shows negative controls proving that NemA cannot perform this catalytic function without cofactors: FMN, NADH and NADPH.
  
https://static.igem.org/mediawiki/2014/6/67/NemA_degradation_of_nitroglycerin_kinetics_exp.png
+
https://static.igem.org/mediawiki/2014/8/86/NG_Controls_small.jpg
  
The Exeter 2014 team also showed that NemA cannot perform this catalytic function without cofactors: FMN, NADH and NADPH.
+
The graph below shows how initial reaction velocity varies with initial concentration of the nitroglycerin in each reaction mixture. The concentrations of substrates and NemA are kept constant.  
  
https://static.igem.org/mediawiki/2014/8/86/NG_Controls_small.jpg
+
https://static.igem.org/mediawiki/2014/6/67/NemA_degradation_of_nitroglycerin_kinetics_exp.png
 +
 
 +
From these data a Hanes-Woolf plot was produced and allowed the Vmax and Km values to be determined as: as 6 M and 21 umol per mg per min respectively.
  
Analysis of these data allowed the kinetic parameters of Km and Vmax of NemA for nitroglycerin to be calculated as 6 M and 21 umol per mg per minute, respectively.  
+
https://static.igem.org/mediawiki/2014/f/f8/Hanes.png
  
 
Full article at: http://2014.igem.org/Team:Exeter/EnzymeValidation
 
Full article at: http://2014.igem.org/Team:Exeter/EnzymeValidation

Revision as of 21:45, 17 October 2014

NemA (N-ethylmaleimide reductase)

N-ethylmaleimide reductase, created for use as a Trinitroltoluene and Nitroglycerine degrading protein. NemA is a flavoprotein that primarily catalyses the reduction of N-ethylmaleimide (NEM), which is toxic to cell growth. However, it is also involved in the degradation of other toxic compounds for their reuse in nitrogen metabolism. Some of these compounds include PETN, quinones and chromate. It increases the resistance of organisms to the toxic effects of these compounds. This sequence only encodes for the protein, an attached His (x6) Tag to allow for purification and a double-STOP codon. It therefore requires regulatory sequences (promoter/RBS/terminator) to be added for expression. The protein has been codon-optimised for expression in E. coli.

The Exeter 2014 team used Raman spectroscopy to show the breakdown of Nitroglycerin by NemA. The image below shows negative controls proving that NemA cannot perform this catalytic function without cofactors: FMN, NADH and NADPH.

NG_Controls_small.jpg

The graph below shows how initial reaction velocity varies with initial concentration of the nitroglycerin in each reaction mixture. The concentrations of substrates and NemA are kept constant.

NemA_degradation_of_nitroglycerin_kinetics_exp.png

From these data a Hanes-Woolf plot was produced and allowed the Vmax and Km values to be determined as: as 6 M and 21 umol per mg per min respectively.

Hanes.png

Full article at: http://2014.igem.org/Team:Exeter/EnzymeValidation

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Unknown
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    INCOMPATIBLE WITH RFC[23]
    Unknown
  • 25
    INCOMPATIBLE WITH RFC[25]
    Unknown
  • 1000
    COMPATIBLE WITH RFC[1000]