Difference between revisions of "Part:BBa K1475001:Design"

 
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<partinfo>BBa_K1475001 short</partinfo>
 
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===Design Notes===
 
===Design Notes===
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The WHO advised amino acid composition was written down and the sequence was then shuffled using (LINK). A 3*FLAG-tag was then added by remiving the respective codons and adding them to the end of the protein to keep the right composition of amino acids.
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The amino acid sequence has been designed by first combining the number of triplets needed to comply with the World Health Organization recommendations for indispensable amino acids within 0.2%.[4] Then the sequence was scrambled until no relation to any known toxic proteins or virulence factors could be found, this was done by searching the coding sequence using Phyre2.[5]
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The figure shows the ratio of indispensable to dispensable amino acids to the human metabolism contained in OneProt in comparison to the ratio recommended by the world health organization (WHO).
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The figure shows the ratio of indispensible amino acids in OneProt compared to the ratio recommended by the world health organization (WHO).
  
  
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===References===
 
===References===
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4. Infographic produced from FAO Statistics Division 2010, Food Balance Sheets, Food and Agriculture Organization of the United Nations, Rome, Italy, viewed 17th March, 2011, Contribution of Carbohydrates in Total Dietary Consumption: http://chartsbin.com/view/1154
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<br>
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5. Infographic produced from FAO Statistics Division 2010, Food Balance Sheets, Food and Agriculture Organization of the United Nations, Rome, Italy, viewed 17th March, 2011, Contribution of Proteins in Total Dietary Consumption: http://chartsbin.com/view/1157
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<br>

Revision as of 22:48, 14 October 2014

OneProt coding region


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The amino acid sequence has been designed by first combining the number of triplets needed to comply with the World Health Organization recommendations for indispensable amino acids within 0.2%.[4] Then the sequence was scrambled until no relation to any known toxic proteins or virulence factors could be found, this was done by searching the coding sequence using Phyre2.[5]


The figure shows the ratio of indispensable to dispensable amino acids to the human metabolism contained in OneProt in comparison to the ratio recommended by the world health organization (WHO).


The figure shows the ratio of indispensible amino acids in OneProt compared to the ratio recommended by the world health organization (WHO).


Source

The sequence is based on WHO guidelines for amounts of amino acids needed in a normal human.

References

4. Infographic produced from FAO Statistics Division 2010, Food Balance Sheets, Food and Agriculture Organization of the United Nations, Rome, Italy, viewed 17th March, 2011, Contribution of Carbohydrates in Total Dietary Consumption: http://chartsbin.com/view/1154
5. Infographic produced from FAO Statistics Division 2010, Food Balance Sheets, Food and Agriculture Organization of the United Nations, Rome, Italy, viewed 17th March, 2011, Contribution of Proteins in Total Dietary Consumption: http://chartsbin.com/view/1157