Difference between revisions of "Part:BBa K1075022"

Revision as of 18:58, 3 October 2013

mCherry- (Ec)ssrA(DAS+4)

construction

The part contains the red fluorescent protein mCherry fused to the E. coli(ec)ssrA (DAS+4) tag.

biology

The ssrA tag is a short peptide sequence, which is fused to the C-terminus of proteins, which should be degraded. It relates to the protease ClpXP complex in E.coli and it also allows the adaptor proteins SspB binding and delivering substrates to the proteases in order to make the process more efficient. The mutated ecssrA(DAS+4) weakens a direct binding between proteases and ecssrA(DAS+4) and increases the dependance of sspB. [http://www.ncbi.nlm.nih.gov/pubmed/16762842]

mCherry is a red fluorescent protein with the excitation maximum at 587 nm and the Emission maximum at 610 nm. [http://www.ncbi.nlm.nih.gov/pubmed/15558047]

application

As we want to control protein degradation by controlling the function of SspB, we tag the red fluorescent protein mCherry with ecssrA(DAS+4) to measure the degradation rate.

Application as a bacterial fotographic film might be possible as well.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
INCOMPATIBLE WITH RFC[12]
Illegal NheI site found at 762
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

@@ Line 3: / Line 3: @@
-mCherry-ecssrA(DAS+4)
 ===construction===
-The part contains the red fluorescent protein mCherry fused to the ssrA (DAS+4) tag.
+The part contains the red fluorescent protein mCherry fused to the E. coli(ec)ssrA (DAS+4) tag.
 ===biology===
-The ssrA tag is a short peptide sequence, which is fused to the C-terminus of proteins, which should be degraded. It relates to the protease ClpXP complex in E.coli and it also allows the adaptor proteins SspB binding and delivering substrates to the proteases in order to make the process more efficient. The mutated ssrA (DAS+4) weakens a direct binding between proteases and ssrA and increases the dependance of sspB.  [http://www.ncbi.nlm.nih.gov/pubmed/16762842]
+The ssrA tag is a short peptide sequence, which is fused to the C-terminus of proteins, which should be degraded. It relates to the protease ClpXP complex in E.coli and it also allows the adaptor proteins SspB binding and delivering substrates to the proteases in order to make the process more efficient. The mutated ecssrA(DAS+4) weakens a direct binding between proteases and ecssrA(DAS+4) and increases the dependance of sspB.  [http://www.ncbi.nlm.nih.gov/pubmed/16762842]
 mCherry is a red fluorescent protein with the excitation maximum at 587 nm and the Emission maximum  at 610 nm. [http://www.ncbi.nlm.nih.gov/pubmed/15558047]
 ===application===
-As we want to control protein degradation by controlling the function of SspB, we tag the red fluorescent protein mCherry with ssrA (DAS+4) to measure the degradation rate.
+As we want to control protein degradation by controlling the function of SspB, we tag the red fluorescent protein mCherry with ecssrA(DAS+4) to measure the degradation rate.
 Application as a bacterial fotographic film might be possible as well.