Difference between revisions of "Part:BBa K1150030"
Line 3: | Line 3: | ||
{| style="color:black" cellpadding="6" cellspacing="1" border="2" align="right" | {| style="color:black" cellpadding="6" cellspacing="1" border="2" align="right" | ||
− | ! colspan="2" style="background:#FFBF00;"| | + | ! colspan="2" style="background:#FFBF00;"|CMV:COP1-VP16:BGH |
|- | |- | ||
|'''Function''' | |'''Function''' | ||
Line 22: | Line 22: | ||
|} | |} | ||
− | The fusion protein COP1-VP16 is an interaction partner of [https://parts.igem.org/Part:BBa_K1150029 dCas9-UVR8]. | + | The fusion protein COP1-VP16 is an interaction partner of [https://parts.igem.org/Part:BBa_K1150029 dCas9-UVR8]. It's a part of the UVB light controlled mechanism to activate or repress gene expression. First the dCas9-UVR8 fusion protein binds specifically to a DNA target sequence. If the system is exposed to UVB light (311 nm), the UVR8 receptor of UV changes its configuration and recruits this COP1-VP16 protein. This activates gene expression induced by UVB light. |
+ | For this UVB light controled gene activation system you need a combination of these BioBricks: [https://parts.igem.org/Part:BBa_K1150029 Cas9-UVR8], [https://parts.igem.org/Part:BBa_K1150030 COP1-VP16] and [https://parts.igem.org/Part:BBa_K1150034 RNaimer]. | ||
==Biology and Usage== | ==Biology and Usage== | ||
− | E3-ubiquitin ligase | + | E3-ubiquitin ligase Constitutively Photomorphogenic 1 (COP1) is the interaction partner of ultraviolet B (UVB) light receptor [https://parts.igem.org/Part:BBa_K1150006 UVR8] [1]. When UVB light is perceived by the UVR8 photoreceptor it monomerizes and therefore changes in its open confuguration. Not till then it recruits COP1. |
<span class='h3bb'> | <span class='h3bb'> |
Revision as of 12:04, 4 October 2013
uniCAS UV Light Switch Part II - Activator
CMV:COP1-VP16:BGH | |
---|---|
Function | Activation domain of UVB light
induced gene expression control |
Use in | Mammalians |
RFC standard | RFC 25 |
Backbone | pSB1C3 |
Submitted by | [http://2013.igem.org/Team:Freiburg Freiburg 2013] |
The fusion protein COP1-VP16 is an interaction partner of dCas9-UVR8. It's a part of the UVB light controlled mechanism to activate or repress gene expression. First the dCas9-UVR8 fusion protein binds specifically to a DNA target sequence. If the system is exposed to UVB light (311 nm), the UVR8 receptor of UV changes its configuration and recruits this COP1-VP16 protein. This activates gene expression induced by UVB light. For this UVB light controled gene activation system you need a combination of these BioBricks: Cas9-UVR8, COP1-VP16 and RNaimer.
Biology and Usage
E3-ubiquitin ligase Constitutively Photomorphogenic 1 (COP1) is the interaction partner of ultraviolet B (UVB) light receptor UVR8 [1]. When UVB light is perceived by the UVR8 photoreceptor it monomerizes and therefore changes in its open confuguration. Not till then it recruits COP1.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 576
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI site found at 1373
Illegal BsaI.rc site found at 1450
Illegal SapI.rc site found at 962
Literature